Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin.xylogalacturonan.biosynthesis.xylogalacturonan xylosyltransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr6 1 CH_asa_840 2 3 0.000697535
Amborella trichopoda AmTr_v1.0_scaffold00046 1 CH_atr_58 4 12 0.00000000372074
Dioscorea dumetorum contig560 1 CH_ddu_216 2 2 0.000207268
Glycine max Gm13 1 CH_gma_237 3 3 0.000002094
Glycine max Gm17 1 CH_gma_44 5 5 0.000000000000181019
Physcomitrium patens Chr22 1 CH_ppa_316 2 6 0.000918977
Populus trichocarpa Chr06 1 CH_ptr_121 4 5 0.0000000014336
Populus trichocarpa Chr18 1 CH_ptr_219 3 3 0.00000110251
Secale cereale GWHASIY00000005 1 CH_sce_659 3 22 0.000167308
Secale cereale GWHASIY00000001 1 CH_sce_962 2 2 0.00095611
Sequoiadendron giganteum chr9 1 CH_sgi_1223 2 2 0.000292291
Saccharum spontaneum Chr2D 1 CH_ssp_898 2 2 0.000238589
Triticum turgidum chr7B 1 CH_ttu_658 2 2 0.000468801
Allium sativum chr6 2 CH_asa_840 2 3 0.000697535
Amborella trichopoda AmTr_v1.0_scaffold00046 2 CH_atr_58 4 12 0.00000000372074
Dioscorea dumetorum contig560 2 CH_ddu_216 2 2 0.000207268
Glycine max Gm13 2 CH_gma_237 3 3 0.000002094
Glycine max Gm17 2 CH_gma_44 5 5 0.000000000000181019
Physcomitrium patens Chr22 2 CH_ppa_316 2 6 0.000918977
Populus trichocarpa Chr06 2 CH_ptr_121 4 5 0.0000000014336
Populus trichocarpa Chr18 2 CH_ptr_219 3 3 0.00000110251
Secale cereale GWHASIY00000005 2 CH_sce_659 3 22 0.000167308
Secale cereale GWHASIY00000001 2 CH_sce_962 2 2 0.00095611
Sequoiadendron giganteum chr9 2 CH_sgi_1223 2 2 0.000292291
Saccharum spontaneum Chr2D 2 CH_ssp_898 2 2 0.000238589
Triticum turgidum chr7B 2 CH_ttu_658 2 2 0.000468801

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001