Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.hemicellulose.heteromannan.modification and degradation.endo-beta-1,4-mannanase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr8 | 1 | CH_asa_751 | 3 | 12 | 0.000403562 |
| Allium sativum | chr1 | 1 | CH_asa_752 | 3 | 12 | 0.000403562 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_420 | 2 | 2 | 0.000802177 |
| Calamus simplicifolius | scaffold15 | 1 | CH_calsi_111 | 3 | 3 | 0.00000246075 |
| Eragrostis curvula | 7 | 1 | CH_ecu_67 | 8 | 68 | 0.00000000000000195799 |
| Magnolia biondii | Chr06 | 1 | CH_mbi_303 | 3 | 8 | 0.0000326641 |
| Marchantia polymorpha | scaffold_110 | 1 | CH_mpo_129 | 2 | 3 | 0.000993889 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_263 | 4 | 13 | 0.000000480712 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_572 | 3 | 3 | 0.000000587373 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_265 | 3 | 5 | 0.000023499 |
| Triticum aestivum | Chr6B | 1 | CH_tae_674 | 3 | 3 | 0.00000106242 |
| Triticum aestivum | Chr6A | 1 | CH_tae_675 | 3 | 3 | 0.00000106242 |
| Triticum aestivum | Chr6D | 1 | CH_tae_998 | 3 | 8 | 0.000059449 |
| Triticum dicoccoides | 6A | 1 | CH_tdi_214 | 3 | 3 | 0.000000601429 |
| Triticum turgidum | chr6B | 1 | CH_ttu_111 | 4 | 4 | 0.000000000125016 |
| Triticum turgidum | chr6A | 1 | CH_ttu_274 | 3 | 3 | 0.00000066666 |
| Zostera marina | Chr06 | 1 | CH_zosmarina_186 | 3 | 27 | 0.0004079 |
| Allium sativum | chr8 | 2 | CH_asa_751 | 3 | 12 | 0.000403562 |
| Allium sativum | chr1 | 2 | CH_asa_752 | 3 | 12 | 0.000403562 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_420 | 2 | 2 | 0.000802177 |
| Calamus simplicifolius | scaffold15 | 2 | CH_calsi_111 | 3 | 3 | 0.00000246075 |
| Eragrostis curvula | 7 | 2 | CH_ecu_67 | 8 | 68 | 0.00000000000000195799 |
| Magnolia biondii | Chr06 | 2 | CH_mbi_303 | 3 | 8 | 0.0000326641 |
| Marchantia polymorpha | scaffold_110 | 2 | CH_mpo_129 | 2 | 3 | 0.000993889 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_263 | 4 | 13 | 0.000000480712 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_572 | 3 | 3 | 0.000000587373 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_265 | 3 | 5 | 0.000023499 |
| Triticum aestivum | Chr6B | 2 | CH_tae_674 | 3 | 3 | 0.00000106242 |
| Triticum aestivum | Chr6A | 2 | CH_tae_675 | 3 | 3 | 0.00000106242 |
| Triticum aestivum | Chr6D | 2 | CH_tae_998 | 3 | 8 | 0.000059449 |
| Triticum dicoccoides | 6A | 2 | CH_tdi_214 | 3 | 3 | 0.000000601429 |
| Triticum turgidum | chr6B | 2 | CH_ttu_111 | 4 | 4 | 0.000000000125016 |
| Triticum turgidum | chr6A | 2 | CH_ttu_274 | 3 | 3 | 0.00000066666 |
| Zostera marina | Chr06 | 2 | CH_zosmarina_186 | 3 | 27 | 0.0004079 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |