Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ubiquitin ligase complexes.BTB/POZ substrate adaptor activities.substate adaptor (LRB)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr3 | 1 | CH_asa_677 | 2 | 3 | 0.000348772 |
| Aegilops tauschii | 5D | 1 | CH_ata_30 | 5 | 8 | 0.000000000000311083 |
| Amborella trichopoda | AmTr_v1.0_scaffold00116 | 1 | CH_atr_34 | 6 | 24 | 0.000000000000267866 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_12 | 6 | 7 | 2.95023e-17 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_721 | 2 | 3 | 0.000278217 |
| Hordeum vulgare | chr5H | 1 | CH_hvu_185 | 3 | 4 | 0.00000118573 |
| Hordeum vulgare | chr5H | 1 | CH_hvu_204 | 3 | 5 | 0.00000296396 |
| Lolium perenne | Lp_chr4_0 | 1 | CH_lpe_58 | 5 | 26 | 0.000000000242831 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_339 | 3 | 3 | 0.00000301302 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_84 | 5 | 7 | 0.0000000000078659 |
| Secale cereale | GWHASIY00000007 | 1 | CH_sce_89 | 5 | 8 | 0.0000000000209697 |
| Triticum aestivum | Chr5B | 1 | CH_tae_209 | 6 | 18 | 0.00000000000263331 |
| Triticum aestivum | Chr5A | 1 | CH_tae_359 | 5 | 15 | 0.00000000138076 |
| Triticum aestivum | Chr5D | 1 | CH_tae_464 | 4 | 6 | 0.0000000217333 |
| Triticum aestivum | Chr5D | 1 | CH_tae_494 | 4 | 7 | 0.0000000506977 |
| Triticum aestivum | Chr4A | 1 | CH_tae_80 | 7 | 10 | 1.53259e-18 |
| Triticum dicoccoides | 5A | 1 | CH_tdi_166 | 4 | 10 | 0.0000000503758 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_227 | 4 | 19 | 0.00000092828 |
| Triticum dicoccoides | 4A | 1 | CH_tdi_230 | 3 | 3 | 0.00000107861 |
| Triticum turgidum | chr4A | 1 | CH_ttu_137 | 4 | 4 | 0.00000000115858 |
| Triticum turgidum | chr5B | 1 | CH_ttu_144 | 5 | 16 | 0.00000000165575 |
| Triticum turgidum | chr5A | 1 | CH_ttu_151 | 5 | 17 | 0.000000002345 |
| Triticum turgidum | chr5B | 1 | CH_ttu_409 | 3 | 4 | 0.000013476 |
| Allium sativum | chr3 | 2 | CH_asa_677 | 2 | 3 | 0.000348772 |
| Aegilops tauschii | 5D | 2 | CH_ata_30 | 5 | 8 | 0.000000000000311083 |
| Amborella trichopoda | AmTr_v1.0_scaffold00116 | 2 | CH_atr_34 | 6 | 24 | 0.000000000000267866 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_12 | 6 | 7 | 2.95023e-17 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_721 | 2 | 3 | 0.000278217 |
| Hordeum vulgare | chr5H | 2 | CH_hvu_185 | 3 | 4 | 0.00000118573 |
| Hordeum vulgare | chr5H | 2 | CH_hvu_204 | 3 | 5 | 0.00000296396 |
| Lolium perenne | Lp_chr4_0 | 2 | CH_lpe_58 | 5 | 26 | 0.000000000242831 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_339 | 3 | 3 | 0.00000301302 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_84 | 5 | 7 | 0.0000000000078659 |
| Secale cereale | GWHASIY00000007 | 2 | CH_sce_89 | 5 | 8 | 0.0000000000209697 |
| Triticum aestivum | Chr5B | 2 | CH_tae_209 | 6 | 18 | 0.00000000000263331 |
| Triticum aestivum | Chr5A | 2 | CH_tae_359 | 5 | 15 | 0.00000000138076 |
| Triticum aestivum | Chr5D | 2 | CH_tae_464 | 4 | 6 | 0.0000000217333 |
| Triticum aestivum | Chr5D | 2 | CH_tae_494 | 4 | 7 | 0.0000000506977 |
| Triticum aestivum | Chr4A | 2 | CH_tae_80 | 7 | 10 | 1.53259e-18 |
| Triticum dicoccoides | 5A | 2 | CH_tdi_166 | 4 | 10 | 0.0000000503758 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_227 | 4 | 19 | 0.00000092828 |
| Triticum dicoccoides | 4A | 2 | CH_tdi_230 | 3 | 3 | 0.00000107861 |
| Triticum turgidum | chr4A | 2 | CH_ttu_137 | 4 | 4 | 0.00000000115858 |
| Triticum turgidum | chr5B | 2 | CH_ttu_144 | 5 | 16 | 0.00000000165575 |
| Triticum turgidum | chr5A | 2 | CH_ttu_151 | 5 | 17 | 0.000000002345 |
| Triticum turgidum | chr5B | 2 | CH_ttu_409 | 3 | 4 | 0.000013476 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |