Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.F-BOX substrate adaptor activities.substrate adaptor (FBX)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr7_2 | 1 | CH_asa_311 | 4 | 9 | 0.0000080477 |
| Eragrostis curvula | 7 | 1 | CH_ecu_225 | 5 | 10 | 0.0000000194881 |
| Eragrostis curvula | 4 | 1 | CH_ecu_273 | 5 | 13 | 0.0000000992673 |
| Eragrostis curvula | 7 | 1 | CH_ecu_760 | 3 | 5 | 0.000694663 |
| Glycine max | Gm18 | 1 | CH_gma_227 | 7 | 47 | 0.00000160524 |
| Glycine max | Gm03 | 1 | CH_gma_234 | 4 | 4 | 0.00000198219 |
| Glycine max | Gm16 | 1 | CH_gma_274 | 4 | 5 | 0.00000989148 |
| Glycine max | Gm19 | 1 | CH_gma_350 | 4 | 7 | 0.0000689689 |
| Glycine max | Gm07 | 1 | CH_gma_623 | 3 | 3 | 0.000809638 |
| Glycine max | Gm06 | 1 | CH_gma_624 | 3 | 3 | 0.000809638 |
| Secale cereale | GWHASIY00000006 | 1 | CH_sce_63 | 6 | 7 | 0.000000000000892566 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_1184 | 3 | 4 | 0.0002307 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_335 | 5 | 6 | 0.000000000388471 |
| Spirodela polyrhiza | pseudo25 | 1 | CH_spo_163 | 3 | 3 | 0.000131456 |
| Saccharum spontaneum | Chr2B | 1 | CH_ssp_737 | 3 | 3 | 0.00011819 |
| Triticum aestivum | Chr6B | 1 | CH_tae_1104 | 3 | 3 | 0.000158849 |
| Triticum aestivum | Chr6D | 1 | CH_tae_1105 | 3 | 3 | 0.000158849 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00025.1 | 1 | CH_zjn_160 | 3 | 5 | 0.000202622 |
| Allium sativum | chr7_2 | 2 | CH_asa_311 | 4 | 9 | 0.0000080477 |
| Eragrostis curvula | 7 | 2 | CH_ecu_225 | 5 | 10 | 0.0000000194881 |
| Eragrostis curvula | 4 | 2 | CH_ecu_273 | 5 | 13 | 0.0000000992673 |
| Eragrostis curvula | 7 | 2 | CH_ecu_760 | 3 | 5 | 0.000694663 |
| Glycine max | Gm18 | 2 | CH_gma_227 | 7 | 47 | 0.00000160524 |
| Glycine max | Gm03 | 2 | CH_gma_234 | 4 | 4 | 0.00000198219 |
| Glycine max | Gm16 | 2 | CH_gma_274 | 4 | 5 | 0.00000989148 |
| Glycine max | Gm19 | 2 | CH_gma_350 | 4 | 7 | 0.0000689689 |
| Glycine max | Gm07 | 2 | CH_gma_623 | 3 | 3 | 0.000809638 |
| Glycine max | Gm06 | 2 | CH_gma_624 | 3 | 3 | 0.000809638 |
| Secale cereale | GWHASIY00000006 | 2 | CH_sce_63 | 6 | 7 | 0.000000000000892566 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_1184 | 3 | 4 | 0.0002307 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_335 | 5 | 6 | 0.000000000388471 |
| Spirodela polyrhiza | pseudo25 | 2 | CH_spo_163 | 3 | 3 | 0.000131456 |
| Saccharum spontaneum | Chr2B | 2 | CH_ssp_737 | 3 | 3 | 0.00011819 |
| Triticum aestivum | Chr6B | 2 | CH_tae_1104 | 3 | 3 | 0.000158849 |
| Triticum aestivum | Chr6D | 2 | CH_tae_1105 | 3 | 3 | 0.000158849 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00025.1 | 2 | CH_zjn_160 | 3 | 5 | 0.000202622 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |