Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.E3 ubiquitin ligase (SINA)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG05 | 1 | CH_aco_30 | 3 | 3 | 0.00000123847 |
| Allium sativum | chr5 | 1 | CH_asa_569 | 3 | 12 | 0.000141537 |
| Aegilops tauschii | 3D | 1 | CH_ata_124 | 4 | 23 | 0.00000104355 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_194 | 4 | 40 | 0.00000875615 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_72 | 4 | 6 | 0.00000000144404 |
| Brachypodium distachyon | Bd2 | 1 | CH_bdi_48 | 5 | 14 | 0.000000000171685 |
| Cenchrus purpureus | GWHAORA00000007 | 1 | CH_cpu_816 | 3 | 11 | 0.000542844 |
| Eragrostis curvula | Contig25 | 1 | CH_ecu_189 | 5 | 24 | 0.00000000313539 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_283 | 3 | 6 | 0.0000375898 |
| Saccharum spontaneum | Chr7D | 1 | CH_ssp_1257 | 3 | 12 | 0.000760951 |
| Saccharum spontaneum | Chr3B | 1 | CH_ssp_529 | 3 | 4 | 0.0000138636 |
| Triticum aestivum | Chr3A | 1 | CH_tae_1087 | 3 | 6 | 0.000138915 |
| Triticum aestivum | Chr3B | 1 | CH_tae_153 | 8 | 36 | 0.0000000000000579392 |
| Triticum aestivum | Chr3D | 1 | CH_tae_969 | 4 | 26 | 0.0000395872 |
| Triticum dicoccoides | 3A | 1 | CH_tdi_187 | 4 | 10 | 0.000000174858 |
| Triticum dicoccoides | 3B | 1 | CH_tdi_419 | 3 | 7 | 0.0000935448 |
| Triticum turgidum | chr3B | 1 | CH_ttu_129 | 5 | 14 | 0.000000000759306 |
| Ananas comosus | LG05 | 2 | CH_aco_30 | 3 | 3 | 0.00000123847 |
| Allium sativum | chr5 | 2 | CH_asa_569 | 3 | 12 | 0.000141537 |
| Aegilops tauschii | 3D | 2 | CH_ata_124 | 4 | 23 | 0.00000104355 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_194 | 4 | 40 | 0.00000875615 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_72 | 4 | 6 | 0.00000000144404 |
| Brachypodium distachyon | Bd2 | 2 | CH_bdi_48 | 5 | 14 | 0.000000000171685 |
| Cenchrus purpureus | GWHAORA00000007 | 2 | CH_cpu_816 | 3 | 11 | 0.000542844 |
| Eragrostis curvula | Contig25 | 2 | CH_ecu_189 | 5 | 24 | 0.00000000313539 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_283 | 3 | 6 | 0.0000375898 |
| Saccharum spontaneum | Chr7D | 2 | CH_ssp_1257 | 3 | 12 | 0.000760951 |
| Saccharum spontaneum | Chr3B | 2 | CH_ssp_529 | 3 | 4 | 0.0000138636 |
| Triticum aestivum | Chr3A | 2 | CH_tae_1087 | 3 | 6 | 0.000138915 |
| Triticum aestivum | Chr3B | 2 | CH_tae_153 | 8 | 36 | 0.0000000000000579392 |
| Triticum aestivum | Chr3D | 2 | CH_tae_969 | 4 | 26 | 0.0000395872 |
| Triticum dicoccoides | 3A | 2 | CH_tdi_187 | 4 | 10 | 0.000000174858 |
| Triticum dicoccoides | 3B | 2 | CH_tdi_419 | 3 | 7 | 0.0000935448 |
| Triticum turgidum | chr3B | 2 | CH_ttu_129 | 5 | 14 | 0.000000000759306 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |