Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.ubiquitin protein ligase (RIN)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Magnolia biondii Chr04 1 CH_mbi_491 2 4 0.000291382
Sequoiadendron giganteum chr1 1 CH_sgi_374 3 3 0.00000000355983
Saccharum spontaneum Chr2C 1 CH_ssp_834 2 3 0.000214726
Magnolia biondii Chr04 2 CH_mbi_491 2 4 0.000291382
Sequoiadendron giganteum chr1 2 CH_sgi_374 3 3 0.00000000355983
Saccharum spontaneum Chr2C 2 CH_ssp_834 2 3 0.000214726

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001