Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-HC-class E3 ligase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brachypodium distachyon Bd3 1 CH_bdi_97 4 5 0.000000232152
Cenchrus purpureus GWHAORA00000002 1 CH_cpu_643 3 3 0.000122308
Magnolia biondii Chr19 1 CH_mbi_73 5 5 0.0000000000135472
Spirodela polyrhiza pseudo16 1 CH_spo_103 3 3 0.0000315394
Triticum turgidum chr3B 1 CH_ttu_539 5 46 0.000186386
Brachypodium distachyon Bd3 2 CH_bdi_97 4 5 0.000000232152
Cenchrus purpureus GWHAORA00000002 2 CH_cpu_643 3 3 0.000122308
Magnolia biondii Chr19 2 CH_mbi_73 5 5 0.0000000000135472
Spirodela polyrhiza pseudo16 2 CH_spo_103 3 3 0.0000315394
Triticum turgidum chr3B 2 CH_ttu_539 5 46 0.000186386

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001