Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.group-III ligase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr5 1 CH_asa_165 4 6 0.0000000231789
Allium sativum chr4 1 CH_asa_6 10 18 6.98647e-26
Calamus simplicifolius scaffold721 1 CH_calsi_23 5 11 0.000000000210985
Ceratophyllum demersum 4 1 CH_cde_129 3 6 0.000104665
Dioscorea dumetorum contig546 1 CH_ddu_243 3 9 0.000273099
Elaeis guineensis EG5.1_Chr2 1 CH_egu_59 4 9 0.000000583493
Magnolia biondii Chr17 1 CH_mbi_175 4 12 0.000000231773
Phyllostachys edulis hic_scaffold_17 1 CH_ped_237 4 22 0.0000107986
Solanum lycopersicum SL4.0ch01 1 CH_sly_42 6 6 4.25366e-16
Saccharum spontaneum Chr4B 1 CH_ssp_108 4 4 0.000000000715101
Triticum turgidum chr6B 1 CH_ttu_643 3 12 0.00042784
Allium sativum chr5 2 CH_asa_165 4 6 0.0000000231789
Allium sativum chr4 2 CH_asa_6 10 18 6.98647e-26
Calamus simplicifolius scaffold721 2 CH_calsi_23 5 11 0.000000000210985
Ceratophyllum demersum 4 2 CH_cde_129 3 6 0.000104665
Dioscorea dumetorum contig546 2 CH_ddu_243 3 9 0.000273099
Elaeis guineensis EG5.1_Chr2 2 CH_egu_59 4 9 0.000000583493
Magnolia biondii Chr17 2 CH_mbi_175 4 12 0.000000231773
Phyllostachys edulis hic_scaffold_17 2 CH_ped_237 4 22 0.0000107986
Solanum lycopersicum SL4.0ch01 2 CH_sly_42 6 6 4.25366e-16
Saccharum spontaneum Chr4B 2 CH_ssp_108 4 4 0.000000000715101
Triticum turgidum chr6B 2 CH_ttu_643 3 12 0.00042784

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001