Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Arg/N-degron pathway.Arg/N-recognin activities.type-II-residues E3 ubiquitin ligase (PRT1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Asparagus officinalis AsparagusV1_04 1 CH_aof_158 2 2 0.000453549
Eragrostis curvula 1 1 CH_ecu_552 2 3 0.000116315
Lolium perenne Lp_chr6_0 1 CH_lpe_208 2 2 0.0000321425
Phyllostachys edulis hic_scaffold_3 1 CH_ped_408 2 3 0.000366698
Secale cereale GWHASIY00000006 1 CH_sce_579 2 3 0.000136584
Sequoiadendron giganteum chr10 1 CH_sgi_506 3 6 0.0000000711915
Asparagus officinalis AsparagusV1_04 2 CH_aof_158 2 2 0.000453549
Eragrostis curvula 1 2 CH_ecu_552 2 3 0.000116315
Lolium perenne Lp_chr6_0 2 CH_lpe_208 2 2 0.0000321425
Phyllostachys edulis hic_scaffold_3 2 CH_ped_408 2 3 0.000366698
Secale cereale GWHASIY00000006 2 CH_sce_579 2 3 0.000136584
Sequoiadendron giganteum chr10 2 CH_sgi_506 3 6 0.0000000711915

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001