Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Arg/N-degron pathway.N-terminal modification.cysteine oxidase (PCO)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr5 | 1 | CH_asa_770 | 2 | 2 | 0.000581305 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_101 | 3 | 3 | 0.000000319452 |
| Ceratophyllum demersum | 12 | 1 | CH_cde_127 | 3 | 7 | 0.0000935382 |
| Cenchrus purpureus | GWHAORA00000011 | 1 | CH_cpu_213 | 6 | 49 | 0.00000000520031 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_357 | 5 | 42 | 0.000000820126 |
| Digitaria exilis | Dexi_CM05836_chr09B | 1 | CH_dex_189 | 4 | 8 | 0.0000000990474 |
| Digitaria exilis | Dexi_CM05836_chr09A | 1 | CH_dex_269 | 5 | 54 | 0.00000154964 |
| Eragrostis curvula | 5 | 1 | CH_ecu_258 | 5 | 38 | 0.0000000723518 |
| Hordeum vulgare | chr5H | 1 | CH_hvu_419 | 2 | 2 | 0.000608754 |
| Magnolia biondii | Chr14 | 1 | CH_mbi_305 | 3 | 10 | 0.0000356305 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_625 | 3 | 4 | 0.00000234909 |
| Triticum aestivum | Chr5B | 1 | CH_tae_773 | 3 | 5 | 0.0000042823 |
| Triticum dicoccoides | 5A | 1 | CH_tdi_211 | 3 | 3 | 0.000000481143 |
| Triticum turgidum | chr5A | 1 | CH_ttu_308 | 3 | 4 | 0.00000167595 |
| Zea mays B104 | scaffold1.4042 | 1 | CH_zma-b104_46 | 2 | 2 | 0.000914355 |
| Allium sativum | chr5 | 2 | CH_asa_770 | 2 | 2 | 0.000581305 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_101 | 3 | 3 | 0.000000319452 |
| Ceratophyllum demersum | 12 | 2 | CH_cde_127 | 3 | 7 | 0.0000935382 |
| Cenchrus purpureus | GWHAORA00000011 | 2 | CH_cpu_213 | 6 | 49 | 0.00000000520031 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_357 | 5 | 42 | 0.000000820126 |
| Digitaria exilis | Dexi_CM05836_chr09B | 2 | CH_dex_189 | 4 | 8 | 0.0000000990474 |
| Digitaria exilis | Dexi_CM05836_chr09A | 2 | CH_dex_269 | 5 | 54 | 0.00000154964 |
| Eragrostis curvula | 5 | 2 | CH_ecu_258 | 5 | 38 | 0.0000000723518 |
| Hordeum vulgare | chr5H | 2 | CH_hvu_419 | 2 | 2 | 0.000608754 |
| Magnolia biondii | Chr14 | 2 | CH_mbi_305 | 3 | 10 | 0.0000356305 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_625 | 3 | 4 | 0.00000234909 |
| Triticum aestivum | Chr5B | 2 | CH_tae_773 | 3 | 5 | 0.0000042823 |
| Triticum dicoccoides | 5A | 2 | CH_tdi_211 | 3 | 3 | 0.000000481143 |
| Triticum turgidum | chr5A | 2 | CH_ttu_308 | 3 | 4 | 0.00000167595 |
| Zea mays B104 | scaffold1.4042 | 2 | CH_zma-b104_46 | 2 | 2 | 0.000914355 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |