Functional clusters
Information
- Type MapMan
- Description Protein modification.phosphorylation.STE protein kinase superfamily.protein kinase (MAPKK)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aegilops tauschii | 4D | 1 | CH_ata_87 | 4 | 12 | 0.0000000584395 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_140 | 3 | 4 | 0.00000652423 |
| Eragrostis curvula | 5 | 1 | CH_ecu_203 | 4 | 7 | 0.00000000612338 |
| Hordeum vulgare | chr4H | 1 | CH_hvu_199 | 3 | 4 | 0.00000217378 |
| Lolium perenne | Lp_chr4_0 | 1 | CH_lpe_201 | 3 | 11 | 0.0000214641 |
| Phyllostachys edulis | hic_scaffold_15 | 1 | CH_ped_211 | 3 | 3 | 0.00000441043 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_515 | 3 | 6 | 0.0000507032 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_680 | 3 | 7 | 0.0000149422 |
| Saccharum spontaneum | Chr1D | 1 | CH_ssp_588 | 3 | 5 | 0.0000311857 |
| Triticum aestivum | Chr4A | 1 | CH_tae_189 | 5 | 5 | 0.00000000000040036 |
| Triticum aestivum | Chr4B | 1 | CH_tae_548 | 4 | 9 | 0.00000016322 |
| Triticum aestivum | Chr4D | 1 | CH_tae_610 | 4 | 11 | 0.000000427262 |
| Triticum dicoccoides | 4B | 1 | CH_tdi_159 | 4 | 8 | 0.0000000328503 |
| Triticum dicoccoides | 4A | 1 | CH_tdi_297 | 3 | 4 | 0.00000703058 |
| Triticum turgidum | chr4A | 1 | CH_ttu_159 | 4 | 5 | 0.00000000405399 |
| Triticum turgidum | chr4B | 1 | CH_ttu_213 | 4 | 8 | 0.0000000567128 |
| Zea mays B73 | 3 | 1 | CH_zma_102 | 3 | 3 | 0.00000219616 |
| Aegilops tauschii | 4D | 2 | CH_ata_87 | 4 | 12 | 0.0000000584395 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_140 | 3 | 4 | 0.00000652423 |
| Eragrostis curvula | 5 | 2 | CH_ecu_203 | 4 | 7 | 0.00000000612338 |
| Hordeum vulgare | chr4H | 2 | CH_hvu_199 | 3 | 4 | 0.00000217378 |
| Lolium perenne | Lp_chr4_0 | 2 | CH_lpe_201 | 3 | 11 | 0.0000214641 |
| Phyllostachys edulis | hic_scaffold_15 | 2 | CH_ped_211 | 3 | 3 | 0.00000441043 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_515 | 3 | 6 | 0.0000507032 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_680 | 3 | 7 | 0.0000149422 |
| Saccharum spontaneum | Chr1D | 2 | CH_ssp_588 | 3 | 5 | 0.0000311857 |
| Triticum aestivum | Chr4A | 2 | CH_tae_189 | 5 | 5 | 0.00000000000040036 |
| Triticum aestivum | Chr4B | 2 | CH_tae_548 | 4 | 9 | 0.00000016322 |
| Triticum aestivum | Chr4D | 2 | CH_tae_610 | 4 | 11 | 0.000000427262 |
| Triticum dicoccoides | 4B | 2 | CH_tdi_159 | 4 | 8 | 0.0000000328503 |
| Triticum dicoccoides | 4A | 2 | CH_tdi_297 | 3 | 4 | 0.00000703058 |
| Triticum turgidum | chr4A | 2 | CH_ttu_159 | 4 | 5 | 0.00000000405399 |
| Triticum turgidum | chr4B | 2 | CH_ttu_213 | 4 | 8 | 0.0000000567128 |
| Zea mays B73 | 3 | 2 | CH_zma_102 | 3 | 3 | 0.00000219616 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |