Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Digitaria exilis Dexi_CM05836_chr05B 1 CH_dex_750 2 2 0.000935766
Oryza alta GWHAZTO00000002 1 CH_oal_733 2 2 0.000564237
Oryza alta GWHAZTO00000014 1 CH_oal_734 2 2 0.000564237
Phyllostachys edulis hic_scaffold_13 1 CH_ped_513 2 2 0.000855659
Panicum hallii Chr05 1 CH_pha_404 2 2 0.000581108
Sequoiadendron giganteum chr7 1 CH_sgi_490 3 3 0.0000000355983
Saccharum spontaneum Chr3D 1 CH_ssp_288 3 3 0.000000388517
Saccharum spontaneum Chr3B 1 CH_ssp_562 3 8 0.000021744
Vanilla planifolia CM028154.1 1 CH_vpl_334 2 2 0.000443328
Digitaria exilis Dexi_CM05836_chr05B 2 CH_dex_750 2 2 0.000935766
Oryza alta GWHAZTO00000002 2 CH_oal_733 2 2 0.000564237
Oryza alta GWHAZTO00000014 2 CH_oal_734 2 2 0.000564237
Phyllostachys edulis hic_scaffold_13 2 CH_ped_513 2 2 0.000855659
Panicum hallii Chr05 2 CH_pha_404 2 2 0.000581108
Sequoiadendron giganteum chr7 2 CH_sgi_490 3 3 0.0000000355983
Saccharum spontaneum Chr3D 2 CH_ssp_288 3 3 0.000000388517
Saccharum spontaneum Chr3B 2 CH_ssp_562 3 8 0.000021744
Vanilla planifolia CM028154.1 2 CH_vpl_334 2 2 0.000443328

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001