Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG16 1 CH_aco_144 2 2 0.000497678
Digitaria exilis Dexi_CM05836_chr01A 1 CH_dex_710 2 2 0.000701825
Populus trichocarpa Chr18 1 CH_ptr_454 2 2 0.000346801
Secale cereale GWHASIY00000003 1 CH_sce_850 2 2 0.00045529
Sequoiadendron giganteum chr4 1 CH_sgi_1403 2 3 0.000876823
Selaginella moellendorffii scaffold_105 1 CH_smo_176 2 2 0.000933707
Saccharum spontaneum Chr1D 1 CH_ssp_1141 2 2 0.000501038
Triticum aestivum Chr3B 1 CH_tae_851 3 7 0.0000102841
Triticum dicoccoides 3B 1 CH_tdi_206 3 3 0.000000378041
Ananas comosus LG16 2 CH_aco_144 2 2 0.000497678
Digitaria exilis Dexi_CM05836_chr01A 2 CH_dex_710 2 2 0.000701825
Populus trichocarpa Chr18 2 CH_ptr_454 2 2 0.000346801
Secale cereale GWHASIY00000003 2 CH_sce_850 2 2 0.00045529
Sequoiadendron giganteum chr4 2 CH_sgi_1403 2 3 0.000876823
Selaginella moellendorffii scaffold_105 2 CH_smo_176 2 2 0.000933707
Saccharum spontaneum Chr1D 2 CH_ssp_1141 2 2 0.000501038
Triticum aestivum Chr3B 2 CH_tae_851 3 7 0.0000102841
Triticum dicoccoides 3B 2 CH_tdi_206 3 3 0.000000378041

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001