Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (UTP2/NOP14)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr5 1 CH_asa_364 2 2 0.0000387537
Glycine max Gm18 1 CH_gma_421 2 2 0.000227734
Phyllostachys edulis hic_scaffold_21 1 CH_ped_422 2 2 0.000407456
Sequoiadendron giganteum chr1 1 CH_sgi_510 3 3 0.0000000711967
Sequoiadendron giganteum chr1 1 CH_sgi_511 3 3 0.0000000711967
Vanilla planifolia CM028154.1 1 CH_vpl_150 2 2 0.000073888
Allium sativum chr5 2 CH_asa_364 2 2 0.0000387537
Glycine max Gm18 2 CH_gma_421 2 2 0.000227734
Phyllostachys edulis hic_scaffold_21 2 CH_ped_422 2 2 0.000407456
Sequoiadendron giganteum chr1 2 CH_sgi_510 3 3 0.0000000711967
Sequoiadendron giganteum chr1 2 CH_sgi_511 3 3 0.0000000711967
Vanilla planifolia CM028154.1 2 CH_vpl_150 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001