Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear export.ATP-dependent export factor (MDN1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 1 CH_aag_127 2 2 0.00024077
Amborella trichopoda AmTr_v1.0_scaffold00067 1 CH_atr_63 3 3 0.00000000946662
Calamus simplicifolius scaffold898 1 CH_calsi_104 3 6 0.00000135172
Ceratophyllum demersum 10 1 CH_cde_78 2 2 0.0000789796
Elaeis guineensis EG5.1_Chr11 1 CH_egu_130 2 2 0.0000947329
Secale cereale GWHASIY00000001 1 CH_sce_466 2 2 0.000045529
Sequoiadendron giganteum chr2 1 CH_sgi_437 3 4 0.000000014239
Saccharum spontaneum Chr7C 1 CH_ssp_1229 2 3 0.000715743
Anthoceros agrestis Sc2ySwM_117 2 CH_aag_127 2 2 0.00024077
Amborella trichopoda AmTr_v1.0_scaffold00067 2 CH_atr_63 3 3 0.00000000946662
Calamus simplicifolius scaffold898 2 CH_calsi_104 3 6 0.00000135172
Ceratophyllum demersum 10 2 CH_cde_78 2 2 0.0000789796
Elaeis guineensis EG5.1_Chr11 2 CH_egu_130 2 2 0.0000947329
Secale cereale GWHASIY00000001 2 CH_sce_466 2 2 0.000045529
Sequoiadendron giganteum chr2 2 CH_sgi_437 3 4 0.000000014239
Saccharum spontaneum Chr7C 2 CH_ssp_1229 2 3 0.000715743

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001