Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.pseudouridine synthase component Nap57/CBF5

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Asparagus officinalis AsparagusV1_07 1 CH_aof_57 2 2 0.0000755915
Elaeis guineensis EG5.1_Chr11 1 CH_egu_121 2 2 0.0000947329
Hordeum vulgare chr2H 1 CH_hvu_348 2 4 0.000243492
Magnolia biondii Chr11 1 CH_mbi_82 4 12 0.000000000170088
Physcomitrium patens Chr22 1 CH_ppa_125 2 3 0.000183812
Secale cereale GWHASIY00000002 1 CH_sce_245 3 6 0.000000248723
Sequoiadendron giganteum chr6 1 CH_sgi_1052 2 2 0.000146145
Saccharum spontaneum Chr2A 1 CH_ssp_960 3 51 0.000354981
Triticum aestivum Chr2A 1 CH_tae_1126 2 2 0.000187066
Triticum aestivum Chr2D 1 CH_tae_1127 2 2 0.000187066
Triticum dicoccoides 2A 1 CH_tdi_445 2 2 0.00017811
Triticum dicoccoides 2B 1 CH_tdi_550 2 3 0.000534312
Triticum turgidum chr2A 1 CH_ttu_495 2 2 0.0000937603
Zoysia japonica ssp. nagirizaki Zjn_sc00016.1 1 CH_zjn_128 2 2 0.000110986
Asparagus officinalis AsparagusV1_07 2 CH_aof_57 2 2 0.0000755915
Elaeis guineensis EG5.1_Chr11 2 CH_egu_121 2 2 0.0000947329
Hordeum vulgare chr2H 2 CH_hvu_348 2 4 0.000243492
Magnolia biondii Chr11 2 CH_mbi_82 4 12 0.000000000170088
Physcomitrium patens Chr22 2 CH_ppa_125 2 3 0.000183812
Secale cereale GWHASIY00000002 2 CH_sce_245 3 6 0.000000248723
Sequoiadendron giganteum chr6 2 CH_sgi_1052 2 2 0.000146145
Saccharum spontaneum Chr2A 2 CH_ssp_960 3 51 0.000354981
Triticum aestivum Chr2A 2 CH_tae_1126 2 2 0.000187066
Triticum aestivum Chr2D 2 CH_tae_1127 2 2 0.000187066
Triticum dicoccoides 2A 2 CH_tdi_445 2 2 0.00017811
Triticum dicoccoides 2B 2 CH_tdi_550 2 3 0.000534312
Triticum turgidum chr2A 2 CH_ttu_495 2 2 0.0000937603
Zoysia japonica ssp. nagirizaki Zjn_sc00016.1 2 CH_zjn_128 2 2 0.000110986

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001