Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.snoRNP scaffold component Nop56

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Hordeum vulgare chr2H 1 CH_hvu_132 3 4 0.0000000395281
Phyllostachys edulis hic_scaffold_15 1 CH_ped_372 2 2 0.000244474
Secale cereale GWHASIY00000002 1 CH_sce_619 2 2 0.000136587
Triticum aestivum Chr2B 1 CH_tae_1369 2 2 0.000673438
Triticum aestivum Chr2A 1 CH_tae_1370 2 2 0.000673438
Triticum aestivum Chr2D 1 CH_tae_1371 2 2 0.000673438
Triticum dicoccoides 2A 1 CH_tdi_519 2 2 0.000445276
Triticum dicoccoides 2B 1 CH_tdi_520 2 2 0.000445276
Triticum turgidum chr2A 1 CH_ttu_601 2 2 0.000312534
Zostera marina Chr01 1 CH_zosmarina_110 2 2 0.0000965577
Hordeum vulgare chr2H 2 CH_hvu_132 3 4 0.0000000395281
Phyllostachys edulis hic_scaffold_15 2 CH_ped_372 2 2 0.000244474
Secale cereale GWHASIY00000002 2 CH_sce_619 2 2 0.000136587
Triticum aestivum Chr2B 2 CH_tae_1369 2 2 0.000673438
Triticum aestivum Chr2A 2 CH_tae_1370 2 2 0.000673438
Triticum aestivum Chr2D 2 CH_tae_1371 2 2 0.000673438
Triticum dicoccoides 2A 2 CH_tdi_519 2 2 0.000445276
Triticum dicoccoides 2B 2 CH_tdi_520 2 2 0.000445276
Triticum turgidum chr2A 2 CH_ttu_601 2 2 0.000312534
Zostera marina Chr01 2 CH_zosmarina_110 2 2 0.0000965577

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001