Functional clusters
Information
- Type MapMan
- Description RNA processing.RNA modification.tRNA-derived fragment biogenesis.T2-type RNase (RNS)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_03 | 1 | CH_aof_172 | 2 | 2 | 0.000453549 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_352 | 2 | 2 | 0.000286492 |
| Brachypodium distachyon | Bd2 | 1 | CH_bdi_288 | 2 | 2 | 0.000370005 |
| Cenchrus purpureus | GWHAORA00000010 | 1 | CH_cpu_190 | 4 | 4 | 0.00000000132507 |
| Cenchrus purpureus | GWHAORA00000002 | 1 | CH_cpu_28 | 8 | 23 | 6.48693e-18 |
| Cenchrus purpureus | GWHAORA00000007 | 1 | CH_cpu_385 | 4 | 14 | 0.00000132259 |
| Digitaria exilis | Dexi_CM05836_chr02A | 1 | CH_dex_244 | 3 | 3 | 0.000000762305 |
| Digitaria exilis | Dexi_CM05836_chr02B | 1 | CH_dex_320 | 3 | 5 | 0.0000076205 |
| Eragrostis curvula | 4 | 1 | CH_ecu_82 | 6 | 10 | 0.0000000000000556649 |
| Glycine max | Gm02 | 1 | CH_gma_88 | 4 | 4 | 0.000000000223929 |
| Hordeum vulgare | chr1H | 1 | CH_hvu_84 | 4 | 6 | 0.00000000063155 |
| Lolium perenne | Lp_chr3_0 | 1 | CH_lpe_449 | 2 | 3 | 0.000964227 |
| Musa acuminata | chr09 | 1 | CH_mac_15 | 5 | 5 | 0.0000000000000361182 |
| Magnolia biondii | Chr01 | 1 | CH_mbi_132 | 4 | 6 | 0.0000000157655 |
| Magnolia biondii | Chr07 | 1 | CH_mbi_162 | 4 | 9 | 0.000000132312 |
| Magnolia biondii | Chr05 | 1 | CH_mbi_237 | 4 | 18 | 0.00000320474 |
| Magnolia biondii | Chr04 | 1 | CH_mbi_91 | 4 | 4 | 0.00000000105166 |
| Oryza alta | GWHAZTO00000007 | 1 | CH_oal_220 | 3 | 4 | 0.000000886797 |
| Oryza brachyantha | 1 | 1 | CH_obr_319 | 2 | 3 | 0.000896004 |
| Oryza brachyantha | 9 | 1 | CH_obr_320 | 2 | 2 | 0.000896004 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_136 | 3 | 4 | 0.000000585672 |
| Phyllostachys edulis | hic_scaffold_3 | 1 | CH_ped_160 | 3 | 3 | 0.00000054788 |
| Panicum hallii | Chr02 | 1 | CH_pha_170 | 3 | 4 | 0.0000011345 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_545 | 2 | 2 | 0.000867002 |
| Populus trichocarpa | Chr08 | 1 | CH_ptr_546 | 2 | 2 | 0.000867002 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_337 | 3 | 5 | 0.00000261125 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_1370 | 2 | 2 | 0.000730727 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_1371 | 2 | 2 | 0.000730727 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_1372 | 2 | 2 | 0.000730727 |
| Selaginella moellendorffii | scaffold_6 | 1 | CH_smo_121 | 2 | 2 | 0.000280112 |
| Setaria viridis | Chr_02 | 1 | CH_svi_184 | 3 | 4 | 0.000000914701 |
| Triticum aestivum | Chr2D | 1 | CH_tae_676 | 3 | 3 | 0.00000106242 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00044.1 | 1 | CH_zjn_219 | 2 | 2 | 0.000554929 |
| Zea mays B73 | 3 | 1 | CH_zma_225 | 2 | 2 | 0.000306788 |
| Zostera marina | Chr05 | 1 | CH_zosmarina_101 | 3 | 10 | 0.000033529 |
| Asparagus officinalis | AsparagusV1_03 | 2 | CH_aof_172 | 2 | 2 | 0.000453549 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_352 | 2 | 2 | 0.000286492 |
| Brachypodium distachyon | Bd2 | 2 | CH_bdi_288 | 2 | 2 | 0.000370005 |
| Cenchrus purpureus | GWHAORA00000010 | 2 | CH_cpu_190 | 4 | 4 | 0.00000000132507 |
| Cenchrus purpureus | GWHAORA00000002 | 2 | CH_cpu_28 | 8 | 23 | 6.48693e-18 |
| Cenchrus purpureus | GWHAORA00000007 | 2 | CH_cpu_385 | 4 | 14 | 0.00000132259 |
| Digitaria exilis | Dexi_CM05836_chr02A | 2 | CH_dex_244 | 3 | 3 | 0.000000762305 |
| Digitaria exilis | Dexi_CM05836_chr02B | 2 | CH_dex_320 | 3 | 5 | 0.0000076205 |
| Eragrostis curvula | 4 | 2 | CH_ecu_82 | 6 | 10 | 0.0000000000000556649 |
| Glycine max | Gm02 | 2 | CH_gma_88 | 4 | 4 | 0.000000000223929 |
| Hordeum vulgare | chr1H | 2 | CH_hvu_84 | 4 | 6 | 0.00000000063155 |
| Lolium perenne | Lp_chr3_0 | 2 | CH_lpe_449 | 2 | 3 | 0.000964227 |
| Musa acuminata | chr09 | 2 | CH_mac_15 | 5 | 5 | 0.0000000000000361182 |
| Magnolia biondii | Chr01 | 2 | CH_mbi_132 | 4 | 6 | 0.0000000157655 |
| Magnolia biondii | Chr07 | 2 | CH_mbi_162 | 4 | 9 | 0.000000132312 |
| Magnolia biondii | Chr05 | 2 | CH_mbi_237 | 4 | 18 | 0.00000320474 |
| Magnolia biondii | Chr04 | 2 | CH_mbi_91 | 4 | 4 | 0.00000000105166 |
| Oryza alta | GWHAZTO00000007 | 2 | CH_oal_220 | 3 | 4 | 0.000000886797 |
| Oryza brachyantha | 1 | 2 | CH_obr_319 | 2 | 3 | 0.000896004 |
| Oryza brachyantha | 9 | 2 | CH_obr_320 | 2 | 2 | 0.000896004 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_136 | 3 | 4 | 0.000000585672 |
| Phyllostachys edulis | hic_scaffold_3 | 2 | CH_ped_160 | 3 | 3 | 0.00000054788 |
| Panicum hallii | Chr02 | 2 | CH_pha_170 | 3 | 4 | 0.0000011345 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_545 | 2 | 2 | 0.000867002 |
| Populus trichocarpa | Chr08 | 2 | CH_ptr_546 | 2 | 2 | 0.000867002 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_337 | 3 | 5 | 0.00000261125 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_1370 | 2 | 2 | 0.000730727 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_1371 | 2 | 2 | 0.000730727 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_1372 | 2 | 2 | 0.000730727 |
| Selaginella moellendorffii | scaffold_6 | 2 | CH_smo_121 | 2 | 2 | 0.000280112 |
| Setaria viridis | Chr_02 | 2 | CH_svi_184 | 3 | 4 | 0.000000914701 |
| Triticum aestivum | Chr2D | 2 | CH_tae_676 | 3 | 3 | 0.00000106242 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00044.1 | 2 | CH_zjn_219 | 2 | 2 | 0.000554929 |
| Zea mays B73 | 3 | 2 | CH_zma_225 | 2 | 2 | 0.000306788 |
| Zostera marina | Chr05 | 2 | CH_zosmarina_101 | 3 | 10 | 0.000033529 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |