Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component Symplekin/Pta1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_362 1 CH_aag_151 2 4 0.000481502
Asparagus officinalis AsparagusV1_05 1 CH_aof_193 2 2 0.000755915
Asparagus officinalis AsparagusV1_07 1 CH_aof_194 2 2 0.000755915
Calamus simplicifolius scaffold747 1 CH_calsi_227 2 2 0.000201396
Ceratophyllum demersum 11 1 CH_cde_23 3 3 0.0000000374281
Musa acuminata chr08 1 CH_mac_143 2 2 0.000170455
Miscanthus sinensis Chr04 1 CH_msi_245 3 13 0.00000444601
Sequoiadendron giganteum chr2 1 CH_sgi_501 3 4 0.0000000569549
Solanum lycopersicum SL4.0ch09 1 CH_sly_464 2 2 0.000352164
Solanum lycopersicum SL4.0ch04 1 CH_sly_465 2 2 0.000352164
Saccharum spontaneum Chr3C 1 CH_ssp_499 3 10 0.0000086032
Saccharum spontaneum Chr3A 1 CH_ssp_77 4 5 0.0000000000256688
Anthoceros agrestis Sc2ySwM_362 2 CH_aag_151 2 4 0.000481502
Asparagus officinalis AsparagusV1_05 2 CH_aof_193 2 2 0.000755915
Asparagus officinalis AsparagusV1_07 2 CH_aof_194 2 2 0.000755915
Calamus simplicifolius scaffold747 2 CH_calsi_227 2 2 0.000201396
Ceratophyllum demersum 11 2 CH_cde_23 3 3 0.0000000374281
Musa acuminata chr08 2 CH_mac_143 2 2 0.000170455
Miscanthus sinensis Chr04 2 CH_msi_245 3 13 0.00000444601
Sequoiadendron giganteum chr2 2 CH_sgi_501 3 4 0.0000000569549
Solanum lycopersicum SL4.0ch09 2 CH_sly_464 2 2 0.000352164
Solanum lycopersicum SL4.0ch04 2 CH_sly_465 2 2 0.000352164
Saccharum spontaneum Chr3C 2 CH_ssp_499 3 10 0.0000086032
Saccharum spontaneum Chr3A 2 CH_ssp_77 4 5 0.0000000000256688

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001