Functional clusters

Information

  • Type MapMan
  • Description RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (USP39)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr4 1 CH_ath_174 3 22 0.0000018955
Ceratophyllum demersum 5 1 CH_cde_222 2 2 0.000473878
Miscanthus sinensis Chr19 1 CH_msi_421 2 2 0.000193193
Miscanthus sinensis Chr18 1 CH_msi_422 2 2 0.000193193
Sequoiadendron giganteum chr8 1 CH_sgi_1018 2 3 0.000146142
Spirodela polyrhiza pseudo5 1 CH_spo_130 2 2 0.000101921
Arabidopsis thaliana Chr4 2 CH_ath_174 3 22 0.0000018955
Ceratophyllum demersum 5 2 CH_cde_222 2 2 0.000473878
Miscanthus sinensis Chr19 2 CH_msi_421 2 2 0.000193193
Miscanthus sinensis Chr18 2 CH_msi_422 2 2 0.000193193
Sequoiadendron giganteum chr8 2 CH_sgi_1018 2 3 0.000146142
Spirodela polyrhiza pseudo5 2 CH_spo_130 2 2 0.000101921

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001