Functional clusters

Information

  • Type MapMan
  • Description RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40C)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00029 1 CH_atr_161 2 2 0.0000794407
Sequoiadendron giganteum chr10 1 CH_sgi_380 3 3 0.00000000355983
Saccharum spontaneum Chr1A 1 CH_ssp_1109 2 3 0.000501038
Saccharum spontaneum Chr1D 1 CH_ssp_626 3 23 0.0000528775
Amborella trichopoda AmTr_v1.0_scaffold00029 2 CH_atr_161 2 2 0.0000794407
Sequoiadendron giganteum chr10 2 CH_sgi_380 3 3 0.00000000355983
Saccharum spontaneum Chr1A 2 CH_ssp_1109 2 3 0.000501038
Saccharum spontaneum Chr1D 2 CH_ssp_626 3 23 0.0000528775

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001