Functional clusters

Information

  • Type MapMan
  • Description DNA damage response.base excision repair (BER).apurinic/apyrimidinic (AP) endonuclease activities.AP-endonuclease (ARP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aegilops tauschii 3D 1 CH_ata_202 2 2 0.0000492417
Brachypodium distachyon Bd2 1 CH_bdi_197 2 2 0.0000616675
Digitaria exilis Dexi_CM05836_chr05B 1 CH_dex_559 2 2 0.000300774
Miscanthus sinensis Chr06 1 CH_msi_474 2 3 0.000289782
Oryza alta GWHAZTO00000013 1 CH_oal_516 2 2 0.000120908
Oryza alta GWHAZTO00000001 1 CH_oal_658 2 3 0.000362716
Oryza brachyantha 1 1 CH_obr_178 2 2 0.0000597336
Oryza sativa ssp. indica Chr1 1 CH_osaindica_267 2 3 0.000154979
Oryza sativa Kitaake Chr1 1 CH_osak_306 2 2 0.0000562857
Oryza sativa ssp. japonica chr01 1 CH_osa_214 2 3 0.0000528123
Phyllostachys edulis hic_scaffold_16 1 CH_ped_337 2 2 0.000122237
Panicum hallii Chr05 1 CH_pha_245 2 2 0.0000581108
Sequoiadendron giganteum chr1 1 CH_sgi_1035 2 3 0.000146142
Setaria viridis Chr_05 1 CH_svi_278 2 2 0.0000521785
Triticum aestivum Chr3A 1 CH_tae_1059 2 2 0.00011224
Triticum dicoccoides 3A 1 CH_tdi_455 2 2 0.00017811
Triticum dicoccoides 3B 1 CH_tdi_456 2 2 0.00017811
Triticum turgidum chr3B 1 CH_ttu_566 2 2 0.000187521
Triticum turgidum chr3A 1 CH_ttu_567 2 2 0.000187521
Aegilops tauschii 3D 2 CH_ata_202 2 2 0.0000492417
Brachypodium distachyon Bd2 2 CH_bdi_197 2 2 0.0000616675
Digitaria exilis Dexi_CM05836_chr05B 2 CH_dex_559 2 2 0.000300774
Miscanthus sinensis Chr06 2 CH_msi_474 2 3 0.000289782
Oryza alta GWHAZTO00000013 2 CH_oal_516 2 2 0.000120908
Oryza alta GWHAZTO00000001 2 CH_oal_658 2 3 0.000362716
Oryza brachyantha 1 2 CH_obr_178 2 2 0.0000597336
Oryza sativa ssp. indica Chr1 2 CH_osaindica_267 2 3 0.000154979
Oryza sativa Kitaake Chr1 2 CH_osak_306 2 2 0.0000562857
Oryza sativa ssp. japonica chr01 2 CH_osa_214 2 3 0.0000528123
Phyllostachys edulis hic_scaffold_16 2 CH_ped_337 2 2 0.000122237
Panicum hallii Chr05 2 CH_pha_245 2 2 0.0000581108
Sequoiadendron giganteum chr1 2 CH_sgi_1035 2 3 0.000146142
Setaria viridis Chr_05 2 CH_svi_278 2 2 0.0000521785
Triticum aestivum Chr3A 2 CH_tae_1059 2 2 0.00011224
Triticum dicoccoides 3A 2 CH_tdi_455 2 2 0.00017811
Triticum dicoccoides 3B 2 CH_tdi_456 2 2 0.00017811
Triticum turgidum chr3B 2 CH_ttu_566 2 2 0.000187521
Triticum turgidum chr3A 2 CH_ttu_567 2 2 0.000187521

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001