Functional clusters
Information
- Type MapMan
- Description Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway.siRNA-binding factor (AGO2)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_299 | 2 | 4 | 0.00017189 |
| Calamus simplicifolius | scaffold572 | 1 | CH_calsi_224 | 2 | 2 | 0.000201396 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_125 | 3 | 3 | 0.00000000516764 |
| Saccharum spontaneum | Chr5D | 1 | CH_ssp_488 | 3 | 25 | 0.00000785213 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_299 | 2 | 4 | 0.00017189 |
| Calamus simplicifolius | scaffold572 | 2 | CH_calsi_224 | 2 | 2 | 0.000201396 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_125 | 3 | 3 | 0.00000000516764 |
| Saccharum spontaneum | Chr5D | 2 | CH_ssp_488 | 3 | 25 | 0.00000785213 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |