Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.siRNA-integrating factor (AGO)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Calamus simplicifolius scaffold158 1 CH_calsi_284 2 2 0.000402793
Cenchrus purpureus GWHAORA00000009 1 CH_cpu_762 3 56 0.000396558
Eragrostis curvula Contig25 1 CH_ecu_172 5 56 0.0000000013562
Lolium perenne Lp_chr3_0 1 CH_lpe_138 3 5 0.000000309914
Oryza sativa ssp. indica Chr1 1 CH_osaindica_330 2 2 0.000309965
Oryza sativa Kitaake Chr1 1 CH_osak_410 2 2 0.000337714
Oryza sativa ssp. japonica chr01 1 CH_osa_397 2 4 0.000950537
Solanum lycopersicum SL4.0ch06 1 CH_sly_522 2 2 0.000586941
Calamus simplicifolius scaffold158 2 CH_calsi_284 2 2 0.000402793
Cenchrus purpureus GWHAORA00000009 2 CH_cpu_762 3 56 0.000396558
Eragrostis curvula Contig25 2 CH_ecu_172 5 56 0.0000000013562
Lolium perenne Lp_chr3_0 2 CH_lpe_138 3 5 0.000000309914
Oryza sativa ssp. indica Chr1 2 CH_osaindica_330 2 2 0.000309965
Oryza sativa Kitaake Chr1 2 CH_osak_410 2 2 0.000337714
Oryza sativa ssp. japonica chr01 2 CH_osa_397 2 4 0.000950537
Solanum lycopersicum SL4.0ch06 2 CH_sly_522 2 2 0.000586941

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001