Functional clusters
Information
- Type MapMan
- Description Chromatin organisation.chromatin structure.DNA wrapping.histone (H3)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 1 | CH_aag_64 | 3 | 11 | 0.0000318518 |
| Allium sativum | chr1 | 1 | CH_asa_21 | 11 | 32 | 1.83875e-19 |
| Allium sativum | chr3 | 1 | CH_asa_213 | 4 | 4 | 0.000000212238 |
| Allium sativum | chr1 | 1 | CH_asa_30 | 11 | 50 | 5.21358e-17 |
| Allium sativum | chr8 | 1 | CH_asa_350 | 6 | 66 | 0.0000335574 |
| Allium sativum | chr5 | 1 | CH_asa_573 | 3 | 3 | 0.000152121 |
| Allium sativum | chr2 | 1 | CH_asa_574 | 3 | 3 | 0.000152121 |
| Aegilops tauschii | 7D | 1 | CH_ata_68 | 6 | 29 | 0.00000000276792 |
| Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_546 | 3 | 5 | 0.0000372504 |
| Eragrostis curvula | 1 | 1 | CH_ecu_447 | 3 | 5 | 0.0000153272 |
| Hordeum vulgare | chr7H | 1 | CH_hvu_147 | 5 | 17 | 0.000000106282 |
| Lolium perenne | Lp_chr3_0 | 1 | CH_lpe_190 | 3 | 5 | 0.0000126408 |
| Oryza alta | GWHAZTO00000006 | 1 | CH_oal_319 | 3 | 6 | 0.0000161955 |
| Oryza sativa Kitaake | Chr6 | 1 | CH_osak_274 | 3 | 6 | 0.0000345694 |
| Oryza sativa ssp. japonica | chr06 | 1 | CH_osa_161 | 3 | 6 | 0.00000702574 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_147 | 6 | 19 | 0.00000000270907 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_300 | 4 | 6 | 0.00000124143 |
| Secale cereale | GWHASIY00000007 | 1 | CH_sce_751 | 3 | 4 | 0.000291109 |
| Saccharum spontaneum | Chr8B | 1 | CH_ssp_611 | 3 | 4 | 0.0000421355 |
| Saccharum spontaneum | Chr8D | 1 | CH_ssp_732 | 3 | 5 | 0.0001053 |
| Triticum aestivum | Chr7B | 1 | CH_tae_235 | 8 | 38 | 0.0000000000107997 |
| Triticum aestivum | Chr7D | 1 | CH_tae_518 | 6 | 29 | 0.0000000921112 |
| Triticum dicoccoides | 7B | 1 | CH_tdi_295 | 5 | 29 | 0.00000655576 |
| Triticum dicoccoides | 7A | 1 | CH_tdi_373 | 4 | 13 | 0.0000427147 |
| Triticum turgidum | chr7B | 1 | CH_ttu_85 | 7 | 21 | 0.00000000000540028 |
| Anthoceros agrestis | Sc2ySwM_228 | 2 | CH_aag_64 | 3 | 11 | 0.0000318518 |
| Allium sativum | chr1 | 2 | CH_asa_21 | 11 | 32 | 1.83875e-19 |
| Allium sativum | chr3 | 2 | CH_asa_213 | 4 | 4 | 0.000000212238 |
| Allium sativum | chr1 | 2 | CH_asa_30 | 11 | 50 | 5.21358e-17 |
| Allium sativum | chr8 | 2 | CH_asa_350 | 6 | 66 | 0.0000335574 |
| Allium sativum | chr5 | 2 | CH_asa_573 | 3 | 3 | 0.000152121 |
| Allium sativum | chr2 | 2 | CH_asa_574 | 3 | 3 | 0.000152121 |
| Aegilops tauschii | 7D | 2 | CH_ata_68 | 6 | 29 | 0.00000000276792 |
| Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_546 | 3 | 5 | 0.0000372504 |
| Eragrostis curvula | 1 | 2 | CH_ecu_447 | 3 | 5 | 0.0000153272 |
| Hordeum vulgare | chr7H | 2 | CH_hvu_147 | 5 | 17 | 0.000000106282 |
| Lolium perenne | Lp_chr3_0 | 2 | CH_lpe_190 | 3 | 5 | 0.0000126408 |
| Oryza alta | GWHAZTO00000006 | 2 | CH_oal_319 | 3 | 6 | 0.0000161955 |
| Oryza sativa Kitaake | Chr6 | 2 | CH_osak_274 | 3 | 6 | 0.0000345694 |
| Oryza sativa ssp. japonica | chr06 | 2 | CH_osa_161 | 3 | 6 | 0.00000702574 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_147 | 6 | 19 | 0.00000000270907 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_300 | 4 | 6 | 0.00000124143 |
| Secale cereale | GWHASIY00000007 | 2 | CH_sce_751 | 3 | 4 | 0.000291109 |
| Saccharum spontaneum | Chr8B | 2 | CH_ssp_611 | 3 | 4 | 0.0000421355 |
| Saccharum spontaneum | Chr8D | 2 | CH_ssp_732 | 3 | 5 | 0.0001053 |
| Triticum aestivum | Chr7B | 2 | CH_tae_235 | 8 | 38 | 0.0000000000107997 |
| Triticum aestivum | Chr7D | 2 | CH_tae_518 | 6 | 29 | 0.0000000921112 |
| Triticum dicoccoides | 7B | 2 | CH_tdi_295 | 5 | 29 | 0.00000655576 |
| Triticum dicoccoides | 7A | 2 | CH_tdi_373 | 4 | 13 | 0.0000427147 |
| Triticum turgidum | chr7B | 2 | CH_ttu_85 | 7 | 21 | 0.00000000000540028 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |