Functional clusters
Information
- Type MapMan
- Description Chromatin organisation.chromatin structure.DNA wrapping.histone (H2B)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr3 | 1 | CH_asa_575 | 3 | 3 | 0.000164793 |
| Aegilops tauschii | 7D | 1 | CH_ata_103 | 4 | 6 | 0.000000193002 |
| Aegilops tauschii | 6D | 1 | CH_ata_110 | 4 | 7 | 0.000000450079 |
| Amborella trichopoda | AmTr_v1.0_scaffold00012 | 1 | CH_atr_82 | 4 | 17 | 0.0000000536275 |
| Ceratophyllum demersum | 3 | 1 | CH_cde_207 | 3 | 17 | 0.000355381 |
| Digitaria exilis | Dexi_CM05836_chr05A | 1 | CH_dex_293 | 3 | 4 | 0.00000304871 |
| Digitaria exilis | Dexi_CM05836_chr05B | 1 | CH_dex_319 | 3 | 5 | 0.0000076205 |
| Eragrostis curvula | Contig25 | 1 | CH_ecu_460 | 3 | 9 | 0.0000227139 |
| Glycine max | Gm11 | 1 | CH_gma_115 | 4 | 6 | 0.00000000447677 |
| Glycine max | Gm12 | 1 | CH_gma_250 | 3 | 4 | 0.00000483964 |
| Hordeum vulgare | chr7H | 1 | CH_hvu_100 | 5 | 10 | 0.00000000222885 |
| Lolium perenne | Lp_chr1_0 | 1 | CH_lpe_239 | 3 | 14 | 0.0000473385 |
| Magnolia biondii | Chr14 | 1 | CH_mbi_292 | 3 | 9 | 0.0000249447 |
| Oryza alta | GWHAZTO00000013 | 1 | CH_oal_141 | 4 | 11 | 0.0000000392131 |
| Oryza alta | GWHAZTO00000006 | 1 | CH_oal_154 | 4 | 12 | 0.0000000588114 |
| Oryza sativa ssp. indica | Chr1 | 1 | CH_osaindica_69 | 5 | 37 | 0.00000000292398 |
| Oryza sativa Kitaake | Chr1 | 1 | CH_osak_54 | 7 | 36 | 0.0000000000000615792 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_48 | 6 | 45 | 0.000000000128299 |
| Phyllostachys edulis | hic_scaffold_16 | 1 | CH_ped_129 | 4 | 9 | 0.0000000781526 |
| Panicum hallii | Chr05 | 1 | CH_pha_266 | 3 | 9 | 0.0000701215 |
| Physcomitrium patens | Chr17 | 1 | CH_ppa_45 | 3 | 4 | 0.00000189192 |
| Populus trichocarpa | Chr08 | 1 | CH_ptr_160 | 4 | 8 | 0.0000000289693 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_168 | 4 | 9 | 0.0000000521323 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_126 | 5 | 6 | 0.000000000502144 |
| Secale cereale | GWHASIY00000007 | 1 | CH_sce_54 | 6 | 6 | 0.0000000000000896335 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_372 | 4 | 5 | 0.00000000315554 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_373 | 4 | 5 | 0.00000000315554 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_273 | 3 | 5 | 0.0000289205 |
| Saccharum spontaneum | Chr6C | 1 | CH_ssp_146 | 6 | 56 | 0.00000000902844 |
| Triticum aestivum | Chr7A | 1 | CH_tae_1120 | 3 | 3 | 0.000174992 |
| Triticum aestivum | Chr3A | 1 | CH_tae_1121 | 3 | 3 | 0.000174992 |
| Triticum aestivum | Chr3D | 1 | CH_tae_1122 | 3 | 3 | 0.000174992 |
| Triticum aestivum | Chr7B | 1 | CH_tae_136 | 7 | 9 | 0.0000000000000108355 |
| Triticum aestivum | Chr1B | 1 | CH_tae_260 | 6 | 10 | 0.0000000000557385 |
| Triticum aestivum | Chr5A | 1 | CH_tae_51 | 9 | 9 | 3.76809e-22 |
| Triticum aestivum | ChrUnknown | 1 | CH_tae_562 | 4 | 4 | 0.000000202962 |
| Triticum aestivum | Chr3B | 1 | CH_tae_563 | 4 | 4 | 0.000000202962 |
| Triticum dicoccoides | 1B | 1 | CH_tdi_136 | 5 | 8 | 0.00000000600973 |
| Triticum dicoccoides | 3A | 1 | CH_tdi_418 | 3 | 3 | 0.0000929241 |
| Triticum dicoccoides | 7A | 1 | CH_tdi_514 | 3 | 4 | 0.000371389 |
| Triticum dicoccoides | 7B | 1 | CH_tdi_60 | 7 | 12 | 0.0000000000000928981 |
| Triticum dicoccoides | 3B | 1 | CH_tdi_634 | 3 | 5 | 0.000927704 |
| Triticum turgidum | chr7B | 1 | CH_ttu_287 | 4 | 6 | 0.000000928675 |
| Triticum turgidum | chr1B | 1 | CH_ttu_327 | 4 | 7 | 0.00000216522 |
| Triticum turgidum | chr7A | 1 | CH_ttu_480 | 3 | 3 | 0.0000639994 |
| Triticum turgidum | chr3A | 1 | CH_ttu_481 | 3 | 3 | 0.0000639994 |
| Allium sativum | chr3 | 2 | CH_asa_575 | 3 | 3 | 0.000164793 |
| Aegilops tauschii | 7D | 2 | CH_ata_103 | 4 | 6 | 0.000000193002 |
| Aegilops tauschii | 6D | 2 | CH_ata_110 | 4 | 7 | 0.000000450079 |
| Amborella trichopoda | AmTr_v1.0_scaffold00012 | 2 | CH_atr_82 | 4 | 17 | 0.0000000536275 |
| Ceratophyllum demersum | 3 | 2 | CH_cde_207 | 3 | 17 | 0.000355381 |
| Digitaria exilis | Dexi_CM05836_chr05A | 2 | CH_dex_293 | 3 | 4 | 0.00000304871 |
| Digitaria exilis | Dexi_CM05836_chr05B | 2 | CH_dex_319 | 3 | 5 | 0.0000076205 |
| Eragrostis curvula | Contig25 | 2 | CH_ecu_460 | 3 | 9 | 0.0000227139 |
| Glycine max | Gm11 | 2 | CH_gma_115 | 4 | 6 | 0.00000000447677 |
| Glycine max | Gm12 | 2 | CH_gma_250 | 3 | 4 | 0.00000483964 |
| Hordeum vulgare | chr7H | 2 | CH_hvu_100 | 5 | 10 | 0.00000000222885 |
| Lolium perenne | Lp_chr1_0 | 2 | CH_lpe_239 | 3 | 14 | 0.0000473385 |
| Magnolia biondii | Chr14 | 2 | CH_mbi_292 | 3 | 9 | 0.0000249447 |
| Oryza alta | GWHAZTO00000013 | 2 | CH_oal_141 | 4 | 11 | 0.0000000392131 |
| Oryza alta | GWHAZTO00000006 | 2 | CH_oal_154 | 4 | 12 | 0.0000000588114 |
| Oryza sativa ssp. indica | Chr1 | 2 | CH_osaindica_69 | 5 | 37 | 0.00000000292398 |
| Oryza sativa Kitaake | Chr1 | 2 | CH_osak_54 | 7 | 36 | 0.0000000000000615792 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_48 | 6 | 45 | 0.000000000128299 |
| Phyllostachys edulis | hic_scaffold_16 | 2 | CH_ped_129 | 4 | 9 | 0.0000000781526 |
| Panicum hallii | Chr05 | 2 | CH_pha_266 | 3 | 9 | 0.0000701215 |
| Physcomitrium patens | Chr17 | 2 | CH_ppa_45 | 3 | 4 | 0.00000189192 |
| Populus trichocarpa | Chr08 | 2 | CH_ptr_160 | 4 | 8 | 0.0000000289693 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_168 | 4 | 9 | 0.0000000521323 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_126 | 5 | 6 | 0.000000000502144 |
| Secale cereale | GWHASIY00000007 | 2 | CH_sce_54 | 6 | 6 | 0.0000000000000896335 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_372 | 4 | 5 | 0.00000000315554 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_373 | 4 | 5 | 0.00000000315554 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_273 | 3 | 5 | 0.0000289205 |
| Saccharum spontaneum | Chr6C | 2 | CH_ssp_146 | 6 | 56 | 0.00000000902844 |
| Triticum aestivum | Chr7A | 2 | CH_tae_1120 | 3 | 3 | 0.000174992 |
| Triticum aestivum | Chr3A | 2 | CH_tae_1121 | 3 | 3 | 0.000174992 |
| Triticum aestivum | Chr3D | 2 | CH_tae_1122 | 3 | 3 | 0.000174992 |
| Triticum aestivum | Chr7B | 2 | CH_tae_136 | 7 | 9 | 0.0000000000000108355 |
| Triticum aestivum | Chr1B | 2 | CH_tae_260 | 6 | 10 | 0.0000000000557385 |
| Triticum aestivum | Chr5A | 2 | CH_tae_51 | 9 | 9 | 3.76809e-22 |
| Triticum aestivum | ChrUnknown | 2 | CH_tae_562 | 4 | 4 | 0.000000202962 |
| Triticum aestivum | Chr3B | 2 | CH_tae_563 | 4 | 4 | 0.000000202962 |
| Triticum dicoccoides | 1B | 2 | CH_tdi_136 | 5 | 8 | 0.00000000600973 |
| Triticum dicoccoides | 3A | 2 | CH_tdi_418 | 3 | 3 | 0.0000929241 |
| Triticum dicoccoides | 7A | 2 | CH_tdi_514 | 3 | 4 | 0.000371389 |
| Triticum dicoccoides | 7B | 2 | CH_tdi_60 | 7 | 12 | 0.0000000000000928981 |
| Triticum dicoccoides | 3B | 2 | CH_tdi_634 | 3 | 5 | 0.000927704 |
| Triticum turgidum | chr7B | 2 | CH_ttu_287 | 4 | 6 | 0.000000928675 |
| Triticum turgidum | chr1B | 2 | CH_ttu_327 | 4 | 7 | 0.00000216522 |
| Triticum turgidum | chr7A | 2 | CH_ttu_480 | 3 | 3 | 0.0000639994 |
| Triticum turgidum | chr3A | 2 | CH_ttu_481 | 3 | 3 | 0.0000639994 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |