Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.CAM/C4 photosynthesis.phosphoenolpyruvate (PEP) carboxylase activity.PEP carboxylase regulatory kinase (PPCK)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr2 1 CH_asa_172 3 4 0.0000000360438
Ceratophyllum demersum 2 1 CH_cde_50 3 6 0.00000187085
Eragrostis curvula 1 1 CH_ecu_774 2 3 0.000697873
Hordeum vulgare chr6H 1 CH_hvu_361 2 2 0.000243502
Lolium perenne Lp_chr6_0 1 CH_lpe_199 3 14 0.0000197296
Lolium perenne Lp_chr6_0 1 CH_lpe_248 3 21 0.0000720565
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_409 3 3 0.00000000355983
Solanum lycopersicum SL4.0ch04 1 CH_sly_480 2 2 0.000352164
Allium sativum chr2 2 CH_asa_172 3 4 0.0000000360438
Ceratophyllum demersum 2 2 CH_cde_50 3 6 0.00000187085
Eragrostis curvula 1 2 CH_ecu_774 2 3 0.000697873
Hordeum vulgare chr6H 2 CH_hvu_361 2 2 0.000243502
Lolium perenne Lp_chr6_0 2 CH_lpe_199 3 14 0.0000197296
Lolium perenne Lp_chr6_0 2 CH_lpe_248 3 21 0.0000720565
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_409 3 3 0.00000000355983
Solanum lycopersicum SL4.0ch04 2 CH_sly_480 2 2 0.000352164

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001