Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cenchrus purpureus GWHAORA00000001 1 CH_cpu_652 3 3 0.000141589
Lolium perenne Lp_chr7_0.1 1 CH_lpe_15 9 28 5.87755e-17
Lolium perenne Lp_scaffold_5331 1 CH_lpe_228 3 3 0.0000342491
Lolium perenne Lp_scaffold_891 1 CH_lpe_99 4 4 0.0000000269717
Oropetium thomaeum contig_9 1 CH_oth_76 5 9 0.000000199014
Triticum aestivum Chr3A 1 CH_tae_1293 3 3 0.00042226
Triticum dicoccoides 3A 1 CH_tdi_262 4 5 0.00000270914
Triticum dicoccoides 3A 1 CH_tdi_503 3 3 0.000326365
Zea mays B104 scaffold2.2587 1 CH_zma-b104_15 4 12 0.0000198755
Cenchrus purpureus GWHAORA00000001 2 CH_cpu_652 3 3 0.000141589
Lolium perenne Lp_chr7_0.1 2 CH_lpe_15 9 28 5.87755e-17
Lolium perenne Lp_scaffold_5331 2 CH_lpe_228 3 3 0.0000342491
Lolium perenne Lp_scaffold_891 2 CH_lpe_99 4 4 0.0000000269717
Oropetium thomaeum contig_9 2 CH_oth_76 5 9 0.000000199014
Triticum aestivum Chr3A 2 CH_tae_1293 3 3 0.00042226
Triticum dicoccoides 3A 2 CH_tdi_262 4 5 0.00000270914
Triticum dicoccoides 3A 2 CH_tdi_503 3 3 0.000326365
Zea mays B104 scaffold2.2587 2 CH_zma-b104_15 4 12 0.0000198755

Available child term results

Ontology identifier Description Number of clusters
1.1.8.1.1 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.membrane subcomplex M 6
1.1.8.1.1.3 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.membrane subcomplex M.component NdhC 6
1.1.8.1.2 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A 2
1.1.8.1.2.5 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.component NdhL 2
1.1.8.1.2.6 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.component NdhM 2
1.1.8.1.2.7 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.component NdhN 4
1.1.8.1.2.8 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.component NdhO 4
1.1.8.1.3.1 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.component PnsB1/NDF1 10
1.1.8.1.3.5 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.component PnsB5/NDH18 4
1.1.8.1.4.1 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.component PnsL1 2
1.1.8.1.4.5 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.component PnsL5 2
1.1.8.1.5.1 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.electron donor-binding subcomplex E.component NdhS 2
1.1.8.1.6 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and maintenance 2
1.1.8.1.6.1 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and maintenance.ndhA-specific mRNA splicing factor 2
1.1.8.1.6.2.2 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and maintenance.Cpn60 chaperonin heterodimer.subunit beta 2
1.1.8.1.6.3 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and maintenance.assembly factor (CRR1) 2
1.1.8.1.6.5 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and maintenance.assembly factor (CRR6) 2
1.1.8.1.6.6 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and maintenance.assembly factor (CRR7) 2
1.1.8.1.6.8 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and maintenance.assembly factor (CRR41) 2
1.1.8.1.6.9 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and maintenance.assembly factor (CRR42) 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001