Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
AagrBONN_evm.TU.Sc2ySwM_344.126 Anthoceros agrestis
Aco016159 Ananas comosus
Aco017766 Ananas comosus
AET2Gv20661500 Aegilops tauschii
AET3Gv20078600 Aegilops tauschii
AET7Gv21167300 Aegilops tauschii
Asa2G00914 Allium sativum
Asa2G07208 Allium sativum
Asa3G00029 Allium sativum
Asa4G00729 Allium sativum
Asa5G03070 Allium sativum
Asa7G02298 Allium sativum
Asa8G04275 Allium sativum
AT3G49560 Arabidopsis thaliana
AT5G24650 Arabidopsis thaliana
ATR0582G341 Amborella trichopoda
Bradi3g44651 Brachypodium distachyon
Bradi5g08930 Brachypodium distachyon
CALSI_Maker00002986 Calamus simplicifolius
CALSI_Maker00021794 Calamus simplicifolius
CALSI_Maker00026272 Calamus simplicifolius
CBR_g48001 Chara braunii
CDE02G1646 Ceratophyllum demersum
CDE02G1662 Ceratophyllum demersum
CDE06G0409 Ceratophyllum demersum
Cre03.g183100 Chlamydomonas reinhardtii
DDU273G0367 Dioscorea dumetorum
Dexi1A01G0015550 Digitaria exilis
Dexi1B01G0014570 Digitaria exilis
Dexi7A01G0005590 Digitaria exilis
Dexi7B01G0006510 Digitaria exilis
EJB05_21484 Eragrostis curvula
EJB05_38146 Eragrostis curvula
evm.TU.AsparagusV1_09.1555.V1.1 Asparagus officinalis
Glyma.04G225600 Glycine max
Glyma.06G139200 Glycine max
GWHGAORA023126 Cenchrus purpureus
GWHGAORA023850 Cenchrus purpureus
GWHGAORA059286 Cenchrus purpureus
GWHGASIY008840 Secale cereale
GWHGASIY012855 Secale cereale
GWHGASIY012856 Secale cereale
GWHGASIY042452 Secale cereale
GWHGAZTO018777 Oryza alta
GWHGAZTO029384 Oryza alta
GWHGAZTO070395 Oryza alta
GWHGAZTO079071 Oryza alta
Horvu_MOREX_2H01G431000 Hordeum vulgare
Horvu_MOREX_3H01G043800 Hordeum vulgare
HPP92_007053 Vanilla planifolia
Ma06_g16580 Musa acuminata
Ma08_g18920 Musa acuminata
Ma10_g13950 Musa acuminata
Mapoly0083s0018 Marchantia polymorpha
MBI07_g11061_MAGBIO Magnolia biondii
MCO01G667 Micromonas commoda
Misin08G148700 Miscanthus sinensis
Misin11G064600 Miscanthus sinensis
Misin12G066900 Miscanthus sinensis
MisinT476900 Miscanthus sinensis
OB02G26510 Oryza brachyantha
OB04G18610 Oryza brachyantha
Os02g0526500 Oryza sativa ssp. japonica
Os04g0405100 Oryza sativa ssp. japonica
OsKitaake02g191801 Oryza sativa Kitaake
OsKitaake04g116400 Oryza sativa Kitaake
OsR498G0203974000.01 Oryza sativa ssp. indica
OsR498G0408502400.01 Oryza sativa ssp. indica
Ot_Chr1_g11319 Oropetium thomaeum
Ot_Chr6_gn36739 Oropetium thomaeum
p5.00_sc00046_p0004 Elaeis guineensis
p5.00_sc01302_p0001 Elaeis guineensis
p5.00_sc04433_p0001 Elaeis guineensis
Pahal.1G251100 Panicum hallii
Pahal.7G136500 Panicum hallii
PH02Gene05703 Phyllostachys edulis
PH02Gene06148 Phyllostachys edulis
PH02Gene10458 Phyllostachys edulis
PH02Gene25130 Phyllostachys edulis
PH02Gene25334 Phyllostachys edulis
PH02Gene49800 Phyllostachys edulis
Potri.012G004600 Populus trichocarpa
Potri.015G000600 Populus trichocarpa
Pp3c16_18078 Physcomitrium patens
Pp3c16_18085 Physcomitrium patens
Pp3c25_7060 Physcomitrium patens
PRCOL_00000888 Prasinoderma coloniale
SEGI_07138 Sequoiadendron giganteum
SEGI_14341 Sequoiadendron giganteum
Seita.1G177800 Setaria italica
Seita.5G279400 Setaria italica
Seita.7G086500 Setaria italica
Sevir.1G180500 Setaria viridis
Sevir.7G093900 Setaria viridis
SMO356G0102 Selaginella moellendorffii
Sobic.004G162500 Sorghum bicolor
Sobic.006G065200 Sorghum bicolor
Solyc03g079940.3 Solanum lycopersicum
Spipo20G0007800 Spirodela polyrhiza
Spipo7G0069100 Spirodela polyrhiza
Sspon.04G0011210-1A Saccharum spontaneum
Sspon.04G0011210-2B Saccharum spontaneum
Sspon.04G0011210-3C Saccharum spontaneum
Sspon.04G0011210-4D Saccharum spontaneum
Sspon.05G0012130-1A Saccharum spontaneum
Sspon.05G0012130-2C Saccharum spontaneum
TraesCS2A03G0728000 Triticum aestivum
TraesCS2B03G0804000 Triticum aestivum
TraesCS2D03G0671200 Triticum aestivum
TraesCS3A03G0080700 Triticum aestivum
TraesCS3B03G0099100 Triticum aestivum
TraesCS3D03G0071600 Triticum aestivum
TRIDC2AG042180 Triticum dicoccoides
TRIDC2BG045240 Triticum dicoccoides
TRIDC3AG004430 Triticum dicoccoides
TRIDC3BG005980 Triticum dicoccoides
TRITD2Av1G177910 Triticum turgidum
TRITD2Bv1G146080 Triticum turgidum
TRITD3Av1G009290 Triticum turgidum
TRITD3Bv1G011310 Triticum turgidum
V3.Lp_chr6_0G3878 Lolium perenne
Zjn_sc00006.1.g04300.1.sm.mk Zoysia japonica ssp. nagirizaki
Zjn_sc00017.1.g04310.1.am.mk Zoysia japonica ssp. nagirizaki
Zjn_sc00017.1.g04320.1.sm.mk Zoysia japonica ssp. nagirizaki
Zjn_sc00020.1.g02120.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00058.1.g03690.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zm00001eb084410 Zea mays B73
Zm00001eb181270 Zea mays B73
Zm00001eb187080 Zea mays B73
Zm00001eb242440 Zea mays B73
Zm00007a00000041 Zea mays B104
Zm00007a00024820 Zea mays B104
Zm00007a00034279 Zea mays B104
Zm00007a00038692 Zea mays B104
Zosma02g14940 Zostera marina

User provided reference genes

Program Settings