Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
AagrBONN_evm.TU.Sc2ySwM_228.4370 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3855 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1493 Anthoceros agrestis
Aco000337 Ananas comosus
Aco005164 Ananas comosus
AET3Gv20345000 Aegilops tauschii
AET4Gv20020300 Aegilops tauschii
AET4Gv20110700 Aegilops tauschii
Asa3G00253 Allium sativum
Asa3G00265 Allium sativum
Asa6G05988 Allium sativum
Asa7G06218 Allium sativum
AT4G13250 Arabidopsis thaliana
AT5G04900 Arabidopsis thaliana
ATR0315G160 Amborella trichopoda
ATR0733G079 Amborella trichopoda
Bradi1g13420 Brachypodium distachyon
Bradi2g07550 Brachypodium distachyon
CALSI_Maker00011460 Calamus simplicifolius
CALSI_Maker00014592 Calamus simplicifolius
CALSI_Maker00014595 Calamus simplicifolius
CALSI_Maker00037721 Calamus simplicifolius
CALSI_Maker00043268 Calamus simplicifolius
CBR_g30763 Chara braunii
CDE05G2070 Ceratophyllum demersum
CDE05G2942 Ceratophyllum demersum
CDE05G3627 Ceratophyllum demersum
Cre12.g517700 Chlamydomonas reinhardtii
Cre14.g608800 Chlamydomonas reinhardtii
DDU227G0015 Dioscorea dumetorum
DDU314G0201 Dioscorea dumetorum
DDU407G0517 Dioscorea dumetorum
Dexi5A01G0001430 Digitaria exilis
Dexi5B01G0001020 Digitaria exilis
Dexi9A01G0014900 Digitaria exilis
Dexi9A01G0014910 Digitaria exilis
Dexi9B01G0013700 Digitaria exilis
Dexi9B01G0013710 Digitaria exilis
EJB05_32693 Eragrostis curvula
EJB05_51534 Eragrostis curvula
evm.TU.AsparagusV1_01.692.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_03.473.V1.1 Asparagus officinalis
Glyma.07G085700 Glycine max
Glyma.09G191200 Glycine max
Glyma.15G215900 Glycine max
GWHGAORA019025 Cenchrus purpureus
GWHGAORA019026 Cenchrus purpureus
GWHGAORA034302 Cenchrus purpureus
GWHGAORA040691 Cenchrus purpureus
GWHGAORA051553 Cenchrus purpureus
GWHGASIY014450 Secale cereale
GWHGASIY014452 Secale cereale
GWHGASIY018097 Secale cereale
GWHGAZTO025791 Oryza alta
GWHGAZTO040511 Oryza alta
GWHGAZTO053998 Oryza alta
GWHGAZTO075729 Oryza alta
Horvu_MOREX_3H01G198100 Hordeum vulgare
Horvu_MOREX_4H01G012600 Hordeum vulgare
HPP92_001902 Vanilla planifolia
HPP92_009033 Vanilla planifolia
HPP92_009035 Vanilla planifolia
Ma02_g04990 Musa acuminata
Ma07_g10650 Musa acuminata
Ma10_g26330 Musa acuminata
Mapoly0054s0037 Marchantia polymorpha
Mapoly0055s0013 Marchantia polymorpha
Mapoly0055s0014 Marchantia polymorpha
Mapoly0115s0053 Marchantia polymorpha
MBI01_g06522_MAGBIO Magnolia biondii
MBI11_g23648_MAGBIO Magnolia biondii
MCO03G236 Micromonas commoda
MCO04G085 Micromonas commoda
Misin01G147000 Miscanthus sinensis
Misin01G147100 Miscanthus sinensis
Misin05G014500 Miscanthus sinensis
Misin06G004000 Miscanthus sinensis
MisinT480700 Miscanthus sinensis
MisinT480800 Miscanthus sinensis
OB01G18200 Oryza brachyantha
OB03G35640 Oryza brachyantha
Os01g0227100 Oryza sativa ssp. japonica
Os03g0654600 Oryza sativa ssp. japonica
OsKitaake01g089200 Oryza sativa Kitaake
OsKitaake03g275900 Oryza sativa Kitaake
OsR498G0100466700.01 Oryza sativa ssp. indica
OsR498G0306694400.01 Oryza sativa ssp. indica
Ot_Chr3_g17812 Oropetium thomaeum
Ot_Chr4_gn35528 Oropetium thomaeum
p5.00_sc00001_p0394 Elaeis guineensis
p5.00_sc01435_p0001 Elaeis guineensis
p5.00_sc01435_p0002 Elaeis guineensis
Pahal.5G530500 Panicum hallii
Pahal.9G147600 Panicum hallii
PH02Gene10867 Phyllostachys edulis
PH02Gene22133 Phyllostachys edulis
PH02Gene44921 Phyllostachys edulis
Potri.008G014200 Populus trichocarpa
Potri.018G081200 Populus trichocarpa
Pp3c21_16710 Physcomitrium patens
Pp3c22_17670 Physcomitrium patens
Pp3c9_4070 Physcomitrium patens
PRCOL_00001004 Prasinoderma coloniale
PRCOL_00002236 Prasinoderma coloniale
PRCOL_00006662 Prasinoderma coloniale
SEGI_08892 Sequoiadendron giganteum
Seita.5G010700 Setaria italica
Seita.9G152400 Setaria italica
Sevir.5G010800 Setaria viridis
Sevir.9G151100 Setaria viridis
SMO013G0024 Selaginella moellendorffii
Sobic.001G150600 Sorghum bicolor
Sobic.003G010600 Sorghum bicolor
Sobic.003G258500 Sorghum bicolor
Sobic.009G115100 Sorghum bicolor
Solyc05g032660.4 Solanum lycopersicum
Solyc07g024000.3 Solanum lycopersicum
Spipo2G0005400 Spirodela polyrhiza
Spipo8G0043300 Spirodela polyrhiza
Sspon.01G0024450-1A Saccharum spontaneum
Sspon.01G0024450-1T Saccharum spontaneum
Sspon.01G0024450-2B Saccharum spontaneum
Sspon.01G0024450-3D Saccharum spontaneum
Sspon.03G0037420-1B Saccharum spontaneum
Sspon.03G0037420-1T Saccharum spontaneum
Sspon.03G0037420-2C Saccharum spontaneum
Sspon.03G0037420-3D Saccharum spontaneum
TraesCS3A03G0351200 Triticum aestivum
TraesCS3B03G0428800 Triticum aestivum
TraesCS3D03G0342600 Triticum aestivum
TraesCS4A03G0680200 Triticum aestivum
TraesCS4A03G0756100 Triticum aestivum
TraesCS4D03G0019600 Triticum aestivum
TraesCS4D03G0097500 Triticum aestivum
TraesCS6B03G1009600 Triticum aestivum
TraesCS6B03G1009700 Triticum aestivum
TRIDC3AG020420 Triticum dicoccoides
TRIDC3BG030830 Triticum dicoccoides
TRIDC4AG040840 Triticum dicoccoides
TRIDC4AG045940 Triticum dicoccoides
TRIDC4BG008310 Triticum dicoccoides
TRIDC4BG008320 Triticum dicoccoides
TRIDC6BG057360 Triticum dicoccoides
TRITD3Av1G063240 Triticum turgidum
TRITD3Bv1G069200 Triticum turgidum
TRITD4Av1G202140 Triticum turgidum
TRITD6Bv1G191140 Triticum turgidum
V3.Lp_chr3_0G6646 Lolium perenne
V3.Lp_chr4_0G8662 Lolium perenne
Zjn_sc00019.1.g03690.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00026.1.g00600.1.am.mkhc Zoysia japonica ssp. nagirizaki
Zm00001eb119410 Zea mays B73
Zm00001eb218390 Zea mays B73
Zm00007a00033072 Zea mays B104
Zm00007a00039389 Zea mays B104
Zosma05g32990 Zostera marina
Zosma06g12190 Zostera marina

User provided reference genes

Program Settings