Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
AagrBONN_evm.TU.Sc2ySwM_117.1046 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5047 Anthoceros agrestis
Aco011335 Ananas comosus
Aco018024 Ananas comosus
AET1Gv20638300 Aegilops tauschii
AET2Gv21310600 Aegilops tauschii
AET3Gv20905000 Aegilops tauschii
Asa0G01449 Allium sativum
Asa2G02736 Allium sativum
Asa6G03661 Allium sativum
Asa6G03664 Allium sativum
Asa6G06134 Allium sativum
Asa7G06745 Allium sativum
AT1G22840 Arabidopsis thaliana
AT4G10040 Arabidopsis thaliana
ATR1089G107 Amborella trichopoda
Bradi2g25030 Brachypodium distachyon
Bradi2g57160 Brachypodium distachyon
CALSI_Maker00000148 Calamus simplicifolius
CALSI_Maker00003664 Calamus simplicifolius
CALSI_Maker00040445 Calamus simplicifolius
CBR_g19557 Chara braunii
CDE02G0194 Ceratophyllum demersum
CDE05G0182 Ceratophyllum demersum
CDE05G1556 Ceratophyllum demersum
CDE05G3035 Ceratophyllum demersum
CDE08G0235 Ceratophyllum demersum
Cre12.g522600 Chlamydomonas reinhardtii
DDU450G0002 Dioscorea dumetorum
DDU556G0163 Dioscorea dumetorum
DDU739G0031 Dioscorea dumetorum
Dexi3A01G0023560 Digitaria exilis
Dexi3B01G0024290 Digitaria exilis
Dexi5A01G0034680 Digitaria exilis
Dexi5B01G0034740 Digitaria exilis
EJB05_18186 Eragrostis curvula
EJB05_18187 Eragrostis curvula
EJB05_35560 Eragrostis curvula
EJB05_56370 Eragrostis curvula
evm.TU.AsparagusV1_04.2790.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_09.376.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_Unassigned.1009.V1.1 Asparagus officinalis
Glyma.01G230900 Glycine max
Glyma.09G246700 Glycine max
Glyma.11G014100 Glycine max
Glyma.14G173200 Glycine max
Glyma.18G246300 Glycine max
GWHGAORA003020 Cenchrus purpureus
GWHGAORA003031 Cenchrus purpureus
GWHGAORA020819 Cenchrus purpureus
GWHGAORA030686 Cenchrus purpureus
GWHGAORA037988 Cenchrus purpureus
GWHGAORA045690 Cenchrus purpureus
GWHGAORA063757 Cenchrus purpureus
GWHGASIY003464 Secale cereale
GWHGASIY017054 Secale cereale
GWHGAZTO006316 Oryza alta
GWHGAZTO032300 Oryza alta
GWHGAZTO034900 Oryza alta
GWHGAZTO046274 Oryza alta
GWHGAZTO058649 Oryza alta
GWHGAZTO083806 Oryza alta
Horvu_MOREX_1H01G404100 Hordeum vulgare
Horvu_MOREX_2H01G797000 Hordeum vulgare
Horvu_MOREX_3H01G564100 Hordeum vulgare
HPP92_004647 Vanilla planifolia
HPP92_011447 Vanilla planifolia
Ma02_g02720 Musa acuminata
Ma05_g01320 Musa acuminata
Ma05_g18530 Musa acuminata
Ma06_g19810 Musa acuminata
Ma07_g24990 Musa acuminata
Ma11_g17880 Musa acuminata
Mapoly0082s0002 Marchantia polymorpha
Mapoly0139s0022 Marchantia polymorpha
MBI03_g28422_MAGBIO Magnolia biondii
MBI06_g21945_MAGBIO Magnolia biondii
MBI07_g30178_MAGBIO Magnolia biondii
MBI15_g05554_MAGBIO Magnolia biondii
MCO03G210 Micromonas commoda
Misin05G364200 Miscanthus sinensis
Misin16G144000 Miscanthus sinensis
Misin17G146100 Miscanthus sinensis
Misin18G170600 Miscanthus sinensis
MisinT001700 Miscanthus sinensis
MisinT002800 Miscanthus sinensis
OB01G48420 Oryza brachyantha
OB04G37950 Oryza brachyantha
OB05G24780 Oryza brachyantha
Os01g0885000 Oryza sativa ssp. japonica
Os04g0693050 Oryza sativa ssp. japonica
Os05g0420600 Oryza sativa ssp. japonica
OsKitaake01g425800 Oryza sativa Kitaake
OsKitaake04g323200 Oryza sativa Kitaake
OsKitaake05g165200 Oryza sativa Kitaake
OsR498G0102470900.01 Oryza sativa ssp. indica
OsR498G0409549500.01 Oryza sativa ssp. indica
OsR498G0510863900.01 Oryza sativa ssp. indica
Ot_Chr1_g24938 Oropetium thomaeum
Ot_Chr3_g13018 Oropetium thomaeum
Ot_Chr5_g05061 Oropetium thomaeum
p5.00_sc00045_p0009 Elaeis guineensis
p5.00_sc00263_p0029 Elaeis guineensis
p5.00_sc00272_p0010 Elaeis guineensis
Pahal.3G275300 Panicum hallii
Pahal.5G065800 Panicum hallii
Pahal.7G352200 Panicum hallii
PH02Gene07891 Phyllostachys edulis
PH02Gene15511 Phyllostachys edulis
PH02Gene40140 Phyllostachys edulis
PH02Gene46328 Phyllostachys edulis
Potri.013G101601 Populus trichocarpa
Potri.019G076001 Populus trichocarpa
Potri.019G076101 Populus trichocarpa
Pp3c19_2800 Physcomitrium patens
Pp3c22_18790 Physcomitrium patens
Pp3c22_8430 Physcomitrium patens
Pp3c7_26740 Physcomitrium patens
PRCOL_00001756 Prasinoderma coloniale
SEGI_19862 Sequoiadendron giganteum
SEGI_32362 Sequoiadendron giganteum
Seita.3G000400 Setaria italica
Seita.3G237400 Setaria italica
Seita.5G405700 Setaria italica
Sevir.3G001000 Setaria viridis
Sevir.3G242900 Setaria viridis
Sevir.5G411400 Setaria viridis
SMO114G0089 Selaginella moellendorffii
SMO116G0350 Selaginella moellendorffii
SMO118G0393 Selaginella moellendorffii
Sobic.003G380300 Sorghum bicolor
Sobic.006G282000 Sorghum bicolor
Sobic.009G141800 Sorghum bicolor
Solyc01g103220.3 Solanum lycopersicum
Solyc11g042420.2 Solanum lycopersicum
Spipo4G0077400 Spirodela polyrhiza
Sspon.03G0001790-1A Saccharum spontaneum
Sspon.03G0001790-2D Saccharum spontaneum
TraesCS1A03G0671500 Triticum aestivum
TraesCS1D03G0634900 Triticum aestivum
TraesCS2B03G1577000 Triticum aestivum
TraesCS2D03G1342300 Triticum aestivum
TraesCS3A03G0948700 Triticum aestivum
TraesCS3B03G1083500 Triticum aestivum
TraesCS3D03G0882500 Triticum aestivum
TRIDC1AG039340 Triticum dicoccoides
TRIDC1BG044720 Triticum dicoccoides
TRIDC3AG057640 Triticum dicoccoides
TRIDC3BG064700 Triticum dicoccoides
TRITD1Av1G166520 Triticum turgidum
TRITD3Av1G234770 Triticum turgidum
TRITD3Bv1G224140 Triticum turgidum
V3.Lp_chr3_0G21380 Lolium perenne
V3.Lp_chr7_0.1G3962 Lolium perenne
Zjn_sc00012.1.g04510.1.am.mk Zoysia japonica ssp. nagirizaki
Zjn_sc00023.1.g07440.1.am.mk Zoysia japonica ssp. nagirizaki
Zjn_sc00025.1.g02160.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00130.1.g00110.1.am.mk Zoysia japonica ssp. nagirizaki
Zjn_sc00255.1.g00040.1.sm.mk Zoysia japonica ssp. nagirizaki
Zm00001eb114720 Zea mays B73
Zm00001eb145520 Zea mays B73
Zm00001eb278730 Zea mays B73
Zm00001eb288340 Zea mays B73
Zm00001eb349110 Zea mays B73
Zm00001eb359040 Zea mays B73
Zm00001eb434570 Zea mays B73
Zm00007a00003531 Zea mays B104
Zm00007a00006155 Zea mays B104
Zm00007a00013451 Zea mays B104
Zm00007a00018389 Zea mays B104
Zm00007a00024109 Zea mays B104
Zm00007a00027827 Zea mays B104
Zm00007a00027987 Zea mays B104
Zm00007a00042501 Zea mays B104
Zosma02g04070 Zostera marina
Zosma03g36520 Zostera marina

User provided reference genes

Program Settings