Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
AagrBONN_evm.TU.Sc2ySwM_228.4795 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2534 Anthoceros agrestis
Aco000583 Ananas comosus
Aco003096 Ananas comosus
Aco012857 Ananas comosus
Aco017056 Ananas comosus
Aco023650 Ananas comosus
Aco024401 Ananas comosus
AET2Gv20518900 Aegilops tauschii
AET5Gv20376000 Aegilops tauschii
AET5Gv20431100 Aegilops tauschii
AET7Gv20932500 Aegilops tauschii
Asa0G01707 Allium sativum
Asa1G00706 Allium sativum
Asa1G01694 Allium sativum
Asa1G04722 Allium sativum
Asa2G00243 Allium sativum
Asa2G02249 Allium sativum
Asa3G03406 Allium sativum
Asa4G00324 Allium sativum
Asa4G03214 Allium sativum
Asa5G01537 Allium sativum
Asa5G05415 Allium sativum
Asa6G05653 Allium sativum
Asa7G07563 Allium sativum
Asa8G00189 Allium sativum
Asa8G01651 Allium sativum
Asa8G02506 Allium sativum
AT2G19830 Arabidopsis thaliana
AT4G29160 Arabidopsis thaliana
ATR0057G133 Amborella trichopoda
ATR0705G112 Amborella trichopoda
ATR1127G038 Amborella trichopoda
Bradi1g27220 Brachypodium distachyon
Bradi1g36320 Brachypodium distachyon
Bradi2g57777 Brachypodium distachyon
Bradi4g26920 Brachypodium distachyon
Bradi4g44120 Brachypodium distachyon
CALSI_Maker00003553 Calamus simplicifolius
CALSI_Maker00025328 Calamus simplicifolius
CALSI_Maker00029700 Calamus simplicifolius
CALSI_Maker00032082 Calamus simplicifolius
CALSI_Maker00035261 Calamus simplicifolius
CALSI_Maker00042341 Calamus simplicifolius
CBR_g23338 Chara braunii
CBR_g31853 Chara braunii
CBR_g44400 Chara braunii
CDE01G0829 Ceratophyllum demersum
CDE02G1616 Ceratophyllum demersum
CDE04G2461 Ceratophyllum demersum
CDE04G2704 Ceratophyllum demersum
Cre06.g282200 Chlamydomonas reinhardtii
DDU115G0024 Dioscorea dumetorum
DDU204G0008 Dioscorea dumetorum
DDU330G0019 Dioscorea dumetorum
DDU473G0070 Dioscorea dumetorum
DDU477G0188 Dioscorea dumetorum
DDU503G0021 Dioscorea dumetorum
DDU506G0194 Dioscorea dumetorum
DDU775G0134 Dioscorea dumetorum
Dexi2A01G0027080 Digitaria exilis
Dexi2B01G0025750 Digitaria exilis
Dexi3A01G0001230 Digitaria exilis
Dexi3B01G0000670 Digitaria exilis
Dexi3B01G0001340 Digitaria exilis
Dexi4A01G0017050 Digitaria exilis
Dexi4B01G0016800 Digitaria exilis
Dexi5A01G0020310 Digitaria exilis
Dexi5B01G0020460 Digitaria exilis
Dexi8A01G0001250 Digitaria exilis
Dexi8B01G0001190 Digitaria exilis
EJB05_02029 Eragrostis curvula
EJB05_12482 Eragrostis curvula
EJB05_29822 Eragrostis curvula
EJB05_29824 Eragrostis curvula
EJB05_41513 Eragrostis curvula
EJB05_44628 Eragrostis curvula
EJB05_52819 Eragrostis curvula
evm.TU.AsparagusV1_01.3526.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_04.3240.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_05.2178.V1.1 Asparagus officinalis
Glyma.01G004500 Glycine max
Glyma.05G224200 Glycine max
Glyma.07G127300 Glycine max
Glyma.08G031200 Glycine max
Glyma.17G216900 Glycine max
GWHGAORA005635 Cenchrus purpureus
GWHGAORA005643 Cenchrus purpureus
GWHGAORA007053 Cenchrus purpureus
GWHGAORA010740 Cenchrus purpureus
GWHGAORA029544 Cenchrus purpureus
GWHGAORA032422 Cenchrus purpureus
GWHGAORA043069 Cenchrus purpureus
GWHGAORA043949 Cenchrus purpureus
GWHGAORA048704 Cenchrus purpureus
GWHGAORA056958 Cenchrus purpureus
GWHGASIY025457 Secale cereale
GWHGASIY025739 Secale cereale
GWHGASIY040237 Secale cereale
GWHGAZTO010225 Oryza alta
GWHGAZTO013453 Oryza alta
GWHGAZTO039598 Oryza alta
GWHGAZTO043908 Oryza alta
GWHGAZTO050468 Oryza alta
GWHGAZTO062461 Oryza alta
GWHGAZTO065438 Oryza alta
GWHGAZTO088323 Oryza alta
GWHGAZTO091448 Oryza alta
GWHGAZTO096948 Oryza alta
Horvu_MOREX_5H01G250700 Hordeum vulgare
Horvu_MOREX_5H01G291900 Hordeum vulgare
Horvu_MOREX_7H01G532700 Hordeum vulgare
HPP92_003022 Vanilla planifolia
HPP92_017989 Vanilla planifolia
HPP92_026701 Vanilla planifolia
HPP92_027532 Vanilla planifolia
HPP92_027533 Vanilla planifolia
Ma01_g09720 Musa acuminata
Ma04_g04040 Musa acuminata
Ma04_g06320 Musa acuminata
Ma04_g13140 Musa acuminata
Ma04_g26160 Musa acuminata
Ma04_g28210 Musa acuminata
Ma09_g23230 Musa acuminata
Mapoly0004s0039 Marchantia polymorpha
Mapoly0016s0116 Marchantia polymorpha
MBI01_g15757_MAGBIO Magnolia biondii
MBI04_g06986_MAGBIO Magnolia biondii
MBI15_g33471_MAGBIO Magnolia biondii
MCO05G687 Micromonas commoda
Misin01G039500 Miscanthus sinensis
Misin02G025100 Miscanthus sinensis
Misin03G265800 Miscanthus sinensis
Misin04G287600 Miscanthus sinensis
Misin05G191600 Miscanthus sinensis
Misin06G193200 Miscanthus sinensis
Misin08G132100 Miscanthus sinensis
Misin09G001100 Miscanthus sinensis
Misin10G011500 Miscanthus sinensis
Misin18G188800 Miscanthus sinensis
Misin19G180300 Miscanthus sinensis
OB06G28440 Oryza brachyantha
OB07G20800 Oryza brachyantha
OB09G11800 Oryza brachyantha
OB11G11110 Oryza brachyantha
OB12G11310 Oryza brachyantha
Os06g0608500 Oryza sativa ssp. japonica
Os07g0490700 Oryza sativa ssp. japonica
Os09g0267600 Oryza sativa ssp. japonica
Os11g0123500 Oryza sativa ssp. japonica
Os12g0121400 Oryza sativa ssp. japonica
OsKitaake06g209900 Oryza sativa Kitaake
OsKitaake07g146200 Oryza sativa Kitaake
OsKitaake09g028900 Oryza sativa Kitaake
OsKitaake11g012700 Oryza sativa Kitaake
OsKitaake12g016200 Oryza sativa Kitaake
OsR498G0612916900.01 Oryza sativa ssp. indica
OsR498G0714336900.01 Oryza sativa ssp. indica
OsR498G0916877500.01 Oryza sativa ssp. indica
OsR498G1119346000.01 Oryza sativa ssp. indica
OsR498G1220823700.01 Oryza sativa ssp. indica
Ot_Chr2_g17475 Oropetium thomaeum
Ot_Chr2_g22103 Oropetium thomaeum
Ot_Chr7_g13367 Oropetium thomaeum
Ot_Chr9_g23344 Oropetium thomaeum
p5.00_sc00003_p0365 Elaeis guineensis
p5.00_sc00015_p0085 Elaeis guineensis
p5.00_sc00019_p0016 Elaeis guineensis
p5.00_sc00023_p0127 Elaeis guineensis
p5.00_sc00068_p0029 Elaeis guineensis
p5.00_sc00092_p0042 Elaeis guineensis
Pahal.2G377000 Panicum hallii
Pahal.4G087300 Panicum hallii
Pahal.5G245000 Panicum hallii
Pahal.8G012700 Panicum hallii
PH02Gene01957 Phyllostachys edulis
PH02Gene03436 Phyllostachys edulis
PH02Gene05534 Phyllostachys edulis
PH02Gene13104 Phyllostachys edulis
PH02Gene13949 Phyllostachys edulis
PH02Gene29209 Phyllostachys edulis
PH02Gene29855 Phyllostachys edulis
PH02Gene30797 Phyllostachys edulis
PH02Gene31967 Phyllostachys edulis
PH02Gene41435 Phyllostachys edulis
PH02Gene42699 Phyllostachys edulis
PH02Gene46049 Phyllostachys edulis
PH02Gene47961 Phyllostachys edulis
PH02Gene50729 Phyllostachys edulis
PH02Gene50818 Phyllostachys edulis
Potri.006G154000 Populus trichocarpa
Potri.018G069900 Populus trichocarpa
Pp3c12_22980 Physcomitrium patens
Pp3c3_36260 Physcomitrium patens
Pp3c4_3530 Physcomitrium patens
Pp3c8_3630 Physcomitrium patens
PRCOL_00007035 Prasinoderma coloniale
SEGI_04292 Sequoiadendron giganteum
SEGI_05800 Sequoiadendron giganteum
SEGI_12223 Sequoiadendron giganteum
SEGI_13895 Sequoiadendron giganteum
SEGI_39063 Sequoiadendron giganteum
Seita.2G319100 Setaria italica
Seita.4G220300 Setaria italica
Seita.5G226800 Setaria italica
Seita.8G009200 Setaria italica
Sevir.2G330200 Setaria viridis
Sevir.4G230100 Setaria viridis
Sevir.5G234360 Setaria viridis
Sevir.7G316300 Setaria viridis
Sevir.8G008600 Setaria viridis
Sevir.9G202060 Setaria viridis
Sobic.001G047400 Sorghum bicolor
Sobic.002G306500 Sorghum bicolor
Sobic.003G220600 Sorghum bicolor
Sobic.005G017300 Sorghum bicolor
Sobic.010G188100 Sorghum bicolor
Solyc05g026050.4 Solanum lycopersicum
Solyc08g065900.4 Solanum lycopersicum
Solyc11g070120.2 Solanum lycopersicum
Spipo17G0008600 Spirodela polyrhiza
Spipo1G0117500 Spirodela polyrhiza
Spipo3G0011000 Spirodela polyrhiza
Spipo7G0023300 Spirodela polyrhiza
Sspon.02G0048310-1C Saccharum spontaneum
Sspon.02G0048310-2D Saccharum spontaneum
Sspon.03G0011240-1A Saccharum spontaneum
Sspon.03G0011240-1P Saccharum spontaneum
Sspon.03G0011240-2B Saccharum spontaneum
Sspon.03G0011240-2P Saccharum spontaneum
Sspon.03G0011240-3D Saccharum spontaneum
Sspon.03G0011240-3P Saccharum spontaneum
Sspon.03G0011240-4P Saccharum spontaneum
Sspon.05G0020780-1A Saccharum spontaneum
Sspon.05G0020780-2B Saccharum spontaneum
Sspon.05G0020780-3C Saccharum spontaneum
Sspon.05G0020780-4D Saccharum spontaneum
Sspon.08G0006090-1A Saccharum spontaneum
Sspon.08G0006090-2B Saccharum spontaneum
Sspon.08G0006090-3C Saccharum spontaneum
TraesCS2A03G0501100 Triticum aestivum
TraesCS2D03G0524400 Triticum aestivum
TraesCS5A03G0400100 Triticum aestivum
TraesCS5A03G0460600 Triticum aestivum
TraesCS5B03G0397900 Triticum aestivum
TraesCS5B03G0455500 Triticum aestivum
TraesCS5D03G0369100 Triticum aestivum
TraesCS5D03G0426000 Triticum aestivum
TraesCS7A03G0924100 Triticum aestivum
TraesCS7B03G0770200 Triticum aestivum
TraesCS7D03G0887600 Triticum aestivum
TRIDC2AG031590 Triticum dicoccoides
TRIDC5AG024210 Triticum dicoccoides
TRIDC5AG028160 Triticum dicoccoides
TRIDC5BG025420 Triticum dicoccoides
TRIDC5BG029610 Triticum dicoccoides
TRIDC7AG053070 Triticum dicoccoides
TRIDC7BG045670 Triticum dicoccoides
TRITD2Av1G105890 Triticum turgidum
TRITD5Av1G109850 Triticum turgidum
TRITD5Av1G126640 Triticum turgidum
TRITD5Bv1G091720 Triticum turgidum
TRITD5Bv1G105970 Triticum turgidum
TRITD7Av1G205120 Triticum turgidum
V3.Lp_chr2_0G8558 Lolium perenne
V3.Lp_chr5_0G10506 Lolium perenne
V3.Lp_chr5_0G8594 Lolium perenne
Zjn_sc00008.1.g05630.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00028.1.g03600.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00035.1.g00365.1.br Zoysia japonica ssp. nagirizaki
Zjn_sc00035.1.g00370.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00069.1.g01860.1.am.mkhc Zoysia japonica ssp. nagirizaki
Zm00001eb061610 Zea mays B73
Zm00001eb162120 Zea mays B73
Zm00001eb195640 Zea mays B73
Zm00001eb226170 Zea mays B73
Zm00001eb321740 Zea mays B73
Zm00001eb358220 Zea mays B73
Zm00001eb386640 Zea mays B73
Zm00001eb386760 Zea mays B73
Zm00001eb422920 Zea mays B73
Zm00007a00001011 Zea mays B104
Zm00007a00020544 Zea mays B104
Zm00007a00027164 Zea mays B104
Zm00007a00036000 Zea mays B104
Zm00007a00036932 Zea mays B104
Zm00007a00039809 Zea mays B104
Zm00007a00049509 Zea mays B104
Zosma03g25700 Zostera marina
Zosma03g36170 Zostera marina
Zosma03g36230 Zostera marina
Zosma04g25040 Zostera marina
Zosma06g13310 Zostera marina

User provided reference genes

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