Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
AagrBONN_evm.TU.Sc2ySwM_117.1248 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1912 Anthoceros agrestis
Aco000786 Ananas comosus
Aco005210 Ananas comosus
Aco008813 Ananas comosus
Aco018264 Ananas comosus
AET1Gv20662500 Aegilops tauschii
AET3Gv20839300 Aegilops tauschii
AET5Gv20161000 Aegilops tauschii
AET6Gv20160800 Aegilops tauschii
AET6Gv20550200 Aegilops tauschii
Asa0G03970 Allium sativum
Asa0G04808 Allium sativum
Asa1G04898 Allium sativum
Asa1G04899 Allium sativum
Asa2G03563 Allium sativum
Asa2G03798 Allium sativum
Asa7G00908 Allium sativum
Asa7G02455 Allium sativum
Asa8G02409 Allium sativum
AT1G54510 Arabidopsis thaliana
AT3G04810 Arabidopsis thaliana
AT3G12200 Arabidopsis thaliana
AT3G20860 Arabidopsis thaliana
AT3G44200 Arabidopsis thaliana
AT3G63280 Arabidopsis thaliana
AT5G28290 Arabidopsis thaliana
ATR0605G360 Amborella trichopoda
ATR0665G218 Amborella trichopoda
ATR0743G127 Amborella trichopoda
ATR0772G156 Amborella trichopoda
Bradi1g14070 Brachypodium distachyon
Bradi1g55730 Brachypodium distachyon
Bradi2g24010 Brachypodium distachyon
Bradi2g55930 Brachypodium distachyon
Bradi3g47370 Brachypodium distachyon
Bradi4g02440 Brachypodium distachyon
Bradi4g37715 Brachypodium distachyon
Bradi5g15883 Brachypodium distachyon
CALSI_Maker00005827 Calamus simplicifolius
CALSI_Maker00012741 Calamus simplicifolius
CALSI_Maker00016008 Calamus simplicifolius
CALSI_Maker00021513 Calamus simplicifolius
CALSI_Maker00025892 Calamus simplicifolius
CALSI_Maker00036422 Calamus simplicifolius
CALSI_Maker00039219 Calamus simplicifolius
CALSI_Maker00039603 Calamus simplicifolius
CALSI_Maker00047375 Calamus simplicifolius
CBR_g20129 Chara braunii
CBR_g27740 Chara braunii
CDE02G0334 Ceratophyllum demersum
CDE02G2882 Ceratophyllum demersum
CDE02G3446 Ceratophyllum demersum
CDE05G1553 Ceratophyllum demersum
CDE06G1213 Ceratophyllum demersum
CDE07G0607 Ceratophyllum demersum
CDE08G1479 Ceratophyllum demersum
Cre01.g001800 Chlamydomonas reinhardtii
Cre02.g075350 Chlamydomonas reinhardtii
Cre02.g107800 Chlamydomonas reinhardtii
Cre04.g226200 Chlamydomonas reinhardtii
Cre05.g232750 Chlamydomonas reinhardtii
Cre06.g268150 Chlamydomonas reinhardtii
Cre07.g328850 Chlamydomonas reinhardtii
Cre07.g339100 Chlamydomonas reinhardtii
Cre10.g443300 Chlamydomonas reinhardtii
Cre12.g499850 Chlamydomonas reinhardtii
Cre12.g560350 Chlamydomonas reinhardtii
Cre13.g567550 Chlamydomonas reinhardtii
Cre17.g747397 Chlamydomonas reinhardtii
DDU066G0030 Dioscorea dumetorum
DDU242G0018 Dioscorea dumetorum
DDU501G0013 Dioscorea dumetorum
DDU501G0078 Dioscorea dumetorum
DDU509G0262 Dioscorea dumetorum
DDU693G0832 Dioscorea dumetorum
DDU879G0509 Dioscorea dumetorum
Dexi1A01G0018890 Digitaria exilis
Dexi1B01G0017530 Digitaria exilis
Dexi2A01G0004590 Digitaria exilis
Dexi2B01G0004140 Digitaria exilis
Dexi3A01G0022550 Digitaria exilis
Dexi3A01G0022560 Digitaria exilis
Dexi3A01G0034720 Digitaria exilis
Dexi3B01G0023240 Digitaria exilis
Dexi3B01G0023250 Digitaria exilis
Dexi3B01G0036490 Digitaria exilis
Dexi5A01G0033370 Digitaria exilis
Dexi5B01G0033530 Digitaria exilis
Dexi9A01G0015770 Digitaria exilis
Dexi9B01G0012660 Digitaria exilis
EJB05_00499 Eragrostis curvula
EJB05_05549 Eragrostis curvula
EJB05_05550 Eragrostis curvula
EJB05_15255 Eragrostis curvula
EJB05_15318 Eragrostis curvula
EJB05_18337 Eragrostis curvula
EJB05_21041 Eragrostis curvula
EJB05_21058 Eragrostis curvula
EJB05_35743 Eragrostis curvula
EJB05_53060 Eragrostis curvula
evm.TU.AsparagusV1_01.3321.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_01.3322.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_03.536.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_04.732.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_04.733.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_07.3253.V1.1 Asparagus officinalis
Glyma.02G145000 Glycine max
Glyma.02G177900 Glycine max
Glyma.02G180100 Glycine max
Glyma.03G140100 Glycine max
Glyma.03G156800 Glycine max
Glyma.03G246100 Glycine max
Glyma.10G029000 Glycine max
Glyma.10G094500 Glycine max
Glyma.10G161400 Glycine max
Glyma.11G179600 Glycine max
Glyma.12G093800 Glycine max
Glyma.12G187700 Glycine max
Glyma.13G313500 Glycine max
Glyma.19G143000 Glycine max
Glyma.19G159100 Glycine max
Glyma.19G243600 Glycine max
Glyma.20G224100 Glycine max
GWHGAORA003133 Cenchrus purpureus
GWHGAORA010033 Cenchrus purpureus
GWHGAORA010223 Cenchrus purpureus
GWHGAORA014511 Cenchrus purpureus
GWHGAORA018922 Cenchrus purpureus
GWHGAORA024189 Cenchrus purpureus
GWHGAORA024239 Cenchrus purpureus
GWHGAORA030819 Cenchrus purpureus
GWHGAORA034775 Cenchrus purpureus
GWHGAORA038079 Cenchrus purpureus
GWHGAORA045544 Cenchrus purpureus
GWHGAORA046830 Cenchrus purpureus
GWHGAORA048670 Cenchrus purpureus
GWHGAORA051694 Cenchrus purpureus
GWHGAORA059644 Cenchrus purpureus
GWHGAORA065317 Cenchrus purpureus
GWHGASIY003609 Secale cereale
GWHGASIY014900 Secale cereale
GWHGASIY015723 Secale cereale
GWHGASIY016785 Secale cereale
GWHGASIY023327 Secale cereale
GWHGASIY024537 Secale cereale
GWHGASIY031946 Secale cereale
GWHGAZTO006120 Oryza alta
GWHGAZTO015779 Oryza alta
GWHGAZTO019274 Oryza alta
GWHGAZTO019275 Oryza alta
GWHGAZTO025647 Oryza alta
GWHGAZTO035067 Oryza alta
GWHGAZTO042284 Oryza alta
GWHGAZTO058433 Oryza alta
GWHGAZTO067631 Oryza alta
GWHGAZTO070887 Oryza alta
GWHGAZTO075588 Oryza alta
GWHGAZTO083978 Oryza alta
GWHGAZTO089933 Oryza alta
GWHGAZTO089934 Oryza alta
Horvu_MOREX_1H01G475000 Hordeum vulgare
Horvu_MOREX_3H01G512800 Hordeum vulgare
Horvu_MOREX_5H01G077700 Hordeum vulgare
Horvu_MOREX_6H01G073200 Hordeum vulgare
Horvu_MOREX_6H01G310200 Hordeum vulgare
HPP92_015772 Vanilla planifolia
HPP92_015773 Vanilla planifolia
HPP92_017649 Vanilla planifolia
HPP92_027463 Vanilla planifolia
Ma03_g10790 Musa acuminata
Ma04_g29150 Musa acuminata
Ma06_g20810 Musa acuminata
Ma07_g03370 Musa acuminata
Ma08_g03010 Musa acuminata
Ma09_g10240 Musa acuminata
Ma09_g26080 Musa acuminata
Ma09_g30240 Musa acuminata
Ma10_g09640 Musa acuminata
Mapoly0027s0176 Marchantia polymorpha
Mapoly2005s0001 Marchantia polymorpha
MBI01_g27618_MAGBIO Magnolia biondii
MBI09_g40773_MAGBIO Magnolia biondii
MBI11_g00135_MAGBIO Magnolia biondii
MBI11_g29746_MAGBIO Magnolia biondii
MBI11_g35026_MAGBIO Magnolia biondii
MBI15_g02237_MAGBIO Magnolia biondii
MBI16_g09821_MAGBIO Magnolia biondii
MBI17_g00901_MAGBIO Magnolia biondii
MBI17_g19807_MAGBIO Magnolia biondii
MBI18_g27883_MAGBIO Magnolia biondii
MCO01G094 Micromonas commoda
MCO04G142 Micromonas commoda
MCO05G326 Micromonas commoda
MCO05G421 Micromonas commoda
MCO07G008 Micromonas commoda
MCO07G706 Micromonas commoda
MCO09G153 Micromonas commoda
MCO09G699 Micromonas commoda
MCO13G494 Micromonas commoda
MCO14G397 Micromonas commoda
Misin01G455800 Miscanthus sinensis
Misin02G136800 Miscanthus sinensis
Misin03G042600 Miscanthus sinensis
Misin04G050400 Miscanthus sinensis
Misin05G326500 Miscanthus sinensis
Misin06G323700 Miscanthus sinensis
Misin07G388400 Miscanthus sinensis
Misin08G185700 Miscanthus sinensis
Misin16G149000 Miscanthus sinensis
Misin17G156900 Miscanthus sinensis
Misin18G185900 Miscanthus sinensis
OB0168G10020 Oryza brachyantha
OB01G47040 Oryza brachyantha
OB02G29830 Oryza brachyantha
OB03G34760 Oryza brachyantha
OB05G25930 Oryza brachyantha
OB07G13750 Oryza brachyantha
OB09G10960 Oryza brachyantha
OB12G24870 Oryza brachyantha
Os01g0864700 Oryza sativa ssp. japonica
Os02g0590800 Oryza sativa ssp. japonica
Os03g0636800 Oryza sativa ssp. japonica
Os05g0440800 Oryza sativa ssp. japonica
Os07g0176600 Oryza sativa ssp. japonica
Os12g0604700 Oryza sativa ssp. japonica
OsKitaake01g410600 Oryza sativa Kitaake
OsKitaake02g227700 Oryza sativa Kitaake
OsKitaake03g265900 Oryza sativa Kitaake
OsKitaake05g176700 Oryza sativa Kitaake
OsKitaake07g050300 Oryza sativa Kitaake
OsKitaake12g203200 Oryza sativa Kitaake
OsR498G0102391800.01 Oryza sativa ssp. indica
OsR498G0204210800.01 Oryza sativa ssp. indica
OsR498G0306621200.01 Oryza sativa ssp. indica
OsR498G0510929300.01 Oryza sativa ssp. indica
OsR498G0713618700.01 Oryza sativa ssp. indica
OsR498G1222065800.01 Oryza sativa ssp. indica
Ot_Chr10_g18193 Oropetium thomaeum
Ot_Chr1_g02612 Oropetium thomaeum
Ot_Chr3_g12887 Oropetium thomaeum
Ot_Chr4_gn35546 Oropetium thomaeum
Ot_Chr5_g04971 Oropetium thomaeum
Ot_Chr7_gn37761 Oropetium thomaeum
p5.00_sc00055_p0015 Elaeis guineensis
p5.00_sc00095_p0053 Elaeis guineensis
p5.00_sc00127_p0092 Elaeis guineensis
p5.00_sc00604_p0002 Elaeis guineensis
Pahal.1G286800 Panicum hallii
Pahal.2G044000 Panicum hallii
Pahal.3G261200 Panicum hallii
Pahal.3G490200 Panicum hallii
Pahal.5G079200 Panicum hallii
Pahal.9G159300 Panicum hallii
PH02Gene01133 Phyllostachys edulis
PH02Gene03074 Phyllostachys edulis
PH02Gene04727 Phyllostachys edulis
PH02Gene08752 Phyllostachys edulis
PH02Gene09233 Phyllostachys edulis
PH02Gene12179 Phyllostachys edulis
PH02Gene15468 Phyllostachys edulis
PH02Gene16199 Phyllostachys edulis
PH02Gene16230 Phyllostachys edulis
PH02Gene19320 Phyllostachys edulis
PH02Gene24083 Phyllostachys edulis
PH02Gene24363 Phyllostachys edulis
PH02Gene24797 Phyllostachys edulis
PH02Gene38184 Phyllostachys edulis
PH02Gene38185 Phyllostachys edulis
PH02Gene47600 Phyllostachys edulis
Potri.001G018700 Populus trichocarpa
Potri.001G218100 Populus trichocarpa
Potri.002G049400 Populus trichocarpa
Potri.003G205400 Populus trichocarpa
Potri.005G051600 Populus trichocarpa
Potri.006G056300 Populus trichocarpa
Potri.009G020100 Populus trichocarpa
Potri.013G039000 Populus trichocarpa
Potri.016G051900 Populus trichocarpa
Pp3c2_28480 Physcomitrium patens
PRCOL_00001593 Prasinoderma coloniale
PRCOL_00002403 Prasinoderma coloniale
PRCOL_00002984 Prasinoderma coloniale
PRCOL_00003928 Prasinoderma coloniale
PRCOL_00004427 Prasinoderma coloniale
PRCOL_00006072 Prasinoderma coloniale
PRCOL_00006618 Prasinoderma coloniale
SEGI_14405 Sequoiadendron giganteum
SEGI_22905 Sequoiadendron giganteum
SEGI_32571 Sequoiadendron giganteum
Seita.1G214200 Setaria italica
Seita.2G050900 Setaria italica
Seita.3G226000 Setaria italica
Seita.3G381600 Setaria italica
Seita.5G392400 Setaria italica
Seita.9G161800 Setaria italica
Sevir.1G217900 Setaria viridis
Sevir.2G055500 Setaria viridis
Sevir.3G231000 Setaria viridis
Sevir.3G398200 Setaria viridis
Sevir.5G397600 Setaria viridis
Sevir.9G160100 Setaria viridis
SMO167G0059 Selaginella moellendorffii
SMO335G0005 Selaginella moellendorffii
SMO335G0022 Selaginella moellendorffii
SMO347G0298 Selaginella moellendorffii
SMO347G0304 Selaginella moellendorffii
Sobic.001G160000 Sorghum bicolor
Sobic.002G051000 Sorghum bicolor
Sobic.003G366300 Sorghum bicolor
Sobic.004G198000 Sorghum bicolor
Sobic.008G159901 Sorghum bicolor
Sobic.009G153800 Sorghum bicolor
Solyc01g009300.3 Solanum lycopersicum
Solyc01g097500.4 Solanum lycopersicum
Solyc03g059250.3 Solanum lycopersicum
Solyc09g065570.4 Solanum lycopersicum
Solyc10g080390.2 Solanum lycopersicum
Solyc11g061960.2 Solanum lycopersicum
Solyc11g071970.2 Solanum lycopersicum
Solyc11g150140.1 Solanum lycopersicum
Spipo12G0034100 Spirodela polyrhiza
Spipo13G0006100 Spirodela polyrhiza
Spipo24G0026200 Spirodela polyrhiza
Spipo2G0017100 Spirodela polyrhiza
Sspon.02G0023560-1A Saccharum spontaneum
Sspon.02G0023560-2B Saccharum spontaneum
Sspon.02G0023560-3D Saccharum spontaneum
Sspon.02G0030650-1A Saccharum spontaneum
Sspon.02G0030650-1P Saccharum spontaneum
Sspon.02G0030650-2B Saccharum spontaneum
Sspon.02G0030650-3C Saccharum spontaneum
Sspon.02G0044960-1B Saccharum spontaneum
Sspon.02G0044960-2D Saccharum spontaneum
Sspon.03G0039750-1C Saccharum spontaneum
Sspon.03G0039750-1P Saccharum spontaneum
Sspon.03G0039750-2D Saccharum spontaneum
Sspon.04G0009450-1A Saccharum spontaneum
Sspon.04G0009450-2B Saccharum spontaneum
Sspon.04G0009450-3C Saccharum spontaneum
Sspon.04G0009450-4D Saccharum spontaneum
Sspon.07G0007000-1A Saccharum spontaneum
Sspon.07G0007000-2B Saccharum spontaneum
Sspon.07G0007000-3C Saccharum spontaneum
Sspon.07G0007000-4D Saccharum spontaneum
TraesCS1A03G0694600 Triticum aestivum
TraesCS1B03G0792000 Triticum aestivum
TraesCS1D03G0660600 Triticum aestivum
TraesCS3A03G0888300 Triticum aestivum
TraesCS3B03G1014700 Triticum aestivum
TraesCS3D03G0815900 Triticum aestivum
TraesCS5A03G0137800 Triticum aestivum
TraesCS5B03G0154200 Triticum aestivum
TraesCS5D03G0160400 Triticum aestivum
TraesCS6A03G0141400 Triticum aestivum
TraesCS6A03G0535300 Triticum aestivum
TraesCS6B03G0200100 Triticum aestivum
TraesCS6B03G0636000 Triticum aestivum
TraesCS6D03G0133800 Triticum aestivum
TraesCS6D03G0472000 Triticum aestivum
TRIDC1AG040890 Triticum dicoccoides
TRIDC1BG046540 Triticum dicoccoides
TRIDC3AG015050 Triticum dicoccoides
TRIDC3AG053940 Triticum dicoccoides
TRIDC3BG060610 Triticum dicoccoides
TRIDC3BG071770 Triticum dicoccoides
TRIDC5AG008290 Triticum dicoccoides
TRIDC5BG010170 Triticum dicoccoides
TRIDC6AG007960 Triticum dicoccoides
TRIDC6AG030550 Triticum dicoccoides
TRIDC6BG011340 Triticum dicoccoides
TRIDC6BG037800 Triticum dicoccoides
TRIDC7BG044880 Triticum dicoccoides
TRITD1Av1G171400 Triticum turgidum
TRITD1Bv1G156930 Triticum turgidum
TRITD2Bv1G239550 Triticum turgidum
TRITD3Av1G219280 Triticum turgidum
TRITD3Bv1G211320 Triticum turgidum
TRITD3Bv1G246430 Triticum turgidum
TRITD5Av1G024770 Triticum turgidum
TRITD5Bv1G025620 Triticum turgidum
TRITD6Av1G014720 Triticum turgidum
TRITD6Av1G117350 Triticum turgidum
TRITD6Bv1G020670 Triticum turgidum
TRITD6Bv1G116700 Triticum turgidum
V3.Lp_chr1_0G16174 Lolium perenne
V3.Lp_chr2_0G11084 Lolium perenne
V3.Lp_chr3_0G20274 Lolium perenne
V3.Lp_chr5_0G1734 Lolium perenne
V3.Lp_chr6_0G10754 Lolium perenne
Zjn_sc00009.1.g05460.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00017.1.g01910.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00019.1.g02670.1.sm.mk Zoysia japonica ssp. nagirizaki
Zjn_sc00024.1.g01640.1.am.mk Zoysia japonica ssp. nagirizaki
Zjn_sc00025.1.g03230.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00030.1.g02760.1.sm.mk Zoysia japonica ssp. nagirizaki
Zjn_sc00037.1.g02890.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00088.1.g01790.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00105.1.g01630.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc01629.1.g00010.1.sm.mk Zoysia japonica ssp. nagirizaki
Zm00001eb031270 Zea mays B73
Zm00001eb135710 Zea mays B73
Zm00001eb146890 Zea mays B73
Zm00001eb186110 Zea mays B73
Zm00001eb218810 Zea mays B73
Zm00001eb241020 Zea mays B73
Zm00001eb245690 Zea mays B73
Zm00001eb288850 Zea mays B73
Zm00001eb301200 Zea mays B73
Zm00007a00020793 Zea mays B104
Zm00007a00025049 Zea mays B104
Zm00007a00025699 Zea mays B104
Zm00007a00031205 Zea mays B104
Zm00007a00037627 Zea mays B104
Zm00007a00048603 Zea mays B104
Zm00007a00048608 Zea mays B104
Zosma01g03970 Zostera marina
Zosma04g16350 Zostera marina
Zosma06g26460 Zostera marina

User provided reference genes

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