Gene: Solyc02g068480.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g068480.3
  • Transcript Identifier Solyc02g068480.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 36432394-36437294 : negative

Gene Family Information

  • ID HOM05D003820
  • #Genes/#Species 181/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g068480.3.1
  • uniprot A0A3Q7F0U0
  • gene_id Solyc02g068480

Descriptions

  • Description U4/U6.U5 tri-snRNP-associated protein 2 (AHRD V3.3 *** A0A2G2XD80_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016579
IEA
GOA Databaseprotein deubiquitination
GO:0016579
IEA
InterProprotein deubiquitination
GO:0000245
IEA
GOA Databasespliceosomal complex assembly
GO:0000245
IEA
InterProspliceosomal complex assembly
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006508
IEA
GOA Databaseproteolysis
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0004843
IEA
GOA Databasethiol-dependent deubiquitinase
GO:0004843
IEA
InterProthiol-dependent deubiquitinase
GO:0008233
IEA
GOA Databasepeptidase activity
GO:0008234
IEA
GOA Databasecysteine-type peptidase activity
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038765 Papain-like cysteine peptidase superfamily
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR033809 USP39
IPR001607 Zinc finger, UBP-type
Mapman id Description
16.2.1.5.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (USP39)