Gene: SGA_v2.0_scaffold31G12772
General Information
Structural Information
- Species Striga asiatica
- Gene Identifier SGA_v2.0_scaffold31G12772
- Transcript Identifier SGA_v2.0_scaffold31T12772
- Gene Type Coding gene
- Location scaffold31 : 1445971-1449235 : negative
Gene Family Information
- ID HOM05D004266
- #Genes/#Species 166/96
- Phylogenetic origin
- ID ORTHO05D005151
- #Genes/#Species 163/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
Descriptions
- product mRNA splicing factor, putative
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031124 | IEA | InterPro | mRNA 3'-end processing | |
| GO:0042868 | ISO | PLAZA Integrative Orthology | antisense RNA metabolic process | AT1G71800 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT1G71800 |
| GO:0031123 | ISO | PLAZA Integrative Orthology | RNA 3'-end processing | AT1G71800 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | AT1G71800 |
| GO:0048589 | ISO | PLAZA Integrative Orthology | developmental growth | AT1G71800 |
| GO:0060968 | ISO | PLAZA Integrative Orthology | regulation of gene silencing | AT1G71800 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G71800 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G71800 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000504 | RNA recognition motif domain |
| IPR026896 | Transcription termination and cleavage factor, C-terminal domain |
| IPR038192 | Transcription termination and cleavage factor, C-terminal domain superfamily |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 16.3.1.3.2 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Stimulatory Factor (CstF) complex.component CstF64/Rna15 |