Gene: SGA_v2.0_scaffold313G48312
General Information
Structural Information
- Species Striga asiatica
- Gene Identifier SGA_v2.0_scaffold313G48312
- Transcript Identifier SGA_v2.0_scaffold313T48312
- Gene Type Coding gene
- Location scaffold313 : 183842-196063 : positive
Gene Family Information
- ID HOM05D000001
- #Genes/#Species 35287/100
- Phylogenetic origin
- ID ORTHO05D004820
- #Genes/#Species 170/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
Descriptions
- product Pentatricopeptide repeat (PPR) superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010053 | ISO | PLAZA Integrative Orthology | root epidermal cell differentiation | AT5G61070 |
| GO:0048510 | ISO | PLAZA Integrative Orthology | regulation of timing of transition from vegetative to reproductive phase | AT5G61060 |
| GO:0016575 | ISO | PLAZA Integrative Orthology | histone deacetylation | AT5G61060 |
| GO:0045604 | ISO | PLAZA Integrative Orthology | regulation of epidermal cell differentiation | AT5G61070 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0004407 | ISO | PLAZA Integrative Orthology | histone deacetylase activity | AT5G61070 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G61070 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G61070 |
| GO:0000118 | ISO | PLAZA Integrative Orthology | histone deacetylase complex | AT5G61060 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002885 | Pentatricopeptide repeat |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR037138 | Histone deacetylase domain superfamily |
| IPR000286 | Histone deacetylase family |
| IPR023801 | Histone deacetylase domain |
| IPR023696 | Ureohydrolase domain superfamily |
| IPR032867 | DYW domain |
| Mapman id | Description |
|---|---|
| 12.3.2.1.2 | Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase |