Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
arahy.Tifrunner.gnm1.ann1.WAKG1R K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) arahy.Tifrunner.gnm1.Arahy.16 - View
arahy.Tifrunner.gnm1.ann1.UBK6DT K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) arahy.Tifrunner.gnm1.Arahy.03 + View
arahy.Tifrunner.gnm1.ann1.8F2DT0 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) arahy.Tifrunner.gnm1.Arahy.18 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr8.1826 chr8 + View
Actinidia chinensis Actinidia13073 Lachesis_group0 - View
Actinidia chinensis Actinidia24129 Lachesis_group24 - View
Actinidia chinensis Actinidia28900 Lachesis_group3 - View
Actinidia chinensis Actinidia07168 Lachesis_group13 - View
Actinidia chinensis Actinidia31331 Lachesis_group20 + View
Actinidia chinensis Actinidia08781 Lachesis_group6 - View
Arabidopsis lyrata AL6G12670 scaffold_6 - View
Avicennia marina MSTRG.10318 ScioBoG_13798_HRSCAF_13862 - View
Avicennia marina MSTRG.26696 ScioBoG_52287_HRSCAF_52434 + View
Aquilegia oxysepala Aqoxy2G01785 CHR02 - View
Arabidopsis thaliana AT5G03340 ATPase, AAA-type, CDC48 protein ATPase%2C AAA-type%2C CDC48 protein%3B FUNCTIONS IN: protein binding%2C ATPase activity%3B LOCATED IN: cell wall%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C Aspartate decarboxylase-like fold (InterPro:IPR009010)%2C Cell division protein 48%2C CDC48%2C domain 2 (InterPro:IPR004201)%2C ATPase%2C AAA-type%2C VAT%2C N-terminal (InterPro:IPR003338)%2C ATPase%2C AAA-type%2C CDC48 (InterPro:IPR005938)%3B BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 - View
Beta vulgaris EL10Ac7g16618 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Chr7_EL10_PGA_scaffold5 - View
Camellia sinensis var. sinensis CSS0009178 PREDICTED: cell division cycle protein 48 homolog [Solanum tuberosum] Chr13 - View
Camellia sinensis var. sinensis CSS0011871 PREDICTED: cell division cycle protein 48 homolog [Prunus mume] Chr11 + View
Camellia sinensis var. sinensis CSS0041444 cell division cycle protein 48 [Camellia sinensis] Chr4 + View
Camellia sinensis var. sinensis CSS0008341 cell division cycle protein 48 [Camellia sinensis] Chr10 + View
Cicer arietinum L. Ca_11493_v3 Ca_LG4_v3 - View
Cicer arietinum L. Ca_08858_v3 Ca_LG3_v3 - View
Corylus avellana Haze_23756 Similar to CDC48: Cell division cycle protein 48 homolog (Glycine max OX%3D3847) 6 + View
Corylus avellana Haze_20559 Similar to CDC48: Cell division cycle protein 48 homolog (Glycine max OX%3D3847) 10 + View
Coffea canephora Cc01_g10600 Cell division cycle protein 48 homolog chr1 + View
Coffea canephora Cc06_g04140 Cell division cycle protein 48 homolog chr6 - View
Citrus clementina Ciclev10027840m.g scaffold_8 + View
Carpinus fangiana Cfa017590 Cfa07 - View
Carya illinoinensis CiPaw.09G173400 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Chr09 + View
Citrullus lanatus ClCG04G009260 ATP-dependent zinc metalloprotease FtsH 3 CG_Chr04 - View
Citrullus lanatus ClCG10G020200 ATP-dependent zinc metalloprotease FtsH 3 CG_Chr10 + View
Cucumis melo MELO3C009349.2 cell division cycle protein 48 homolog chr04 + View
Capsella rubella Carub.0006s0215 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) scaffold_6 - View
Cucumis sativus L. CsaV3_3G035900 cell division cycle 48 chr3 - View
Cucumis sativus L. CsaV3_6G039850 cell division cycle 48 chr6 - View
Daucus carota DCAR_014993 hypothetical protein DCARv2_Chr4 + View
Daucus carota DCAR_017688 hypothetical protein DCARv2_Chr5 + View
Daucus carota DCAR_020824 hypothetical protein DCARv2_Chr6 - View
Davidia involucrata Dinv34699 GWHABJS00000010 + View
Davidia involucrata Dinv37306 GWHABJS00000021 + View
Davidia involucrata Dinv35778 GWHABJS00000015 - View
Durio zibethinus Duzib150G1429 NW_019167882.1 + View
Durio zibethinus Duzib128G1076 NW_019168481.1 + View
Durio zibethinus Duzib093G0198 NW_019167937.1 + View
Durio zibethinus Duzib106G1759 NW_019168492.1 + View
Erigeron canadensis ECA238G0239 Conyza_canadensis_scaffold:6 - View
Erigeron canadensis ECA248G0147 Conyza_canadensis_scaffold:9 - View
Erigeron canadensis ECA248G3803 Conyza_canadensis_scaffold:9 - View
Erythranthe guttata Migut.D02258 scaffold_4 - View
Erythranthe guttata Migut.J00517 scaffold_10 + View
Eutrema salsugineum Thhalv10012714m.g K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) scaffold_2 - View
Fragaria x ananassa FAN14G0014 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Fvb6-1 + View
Fragaria x ananassa FAN02G4387 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Fvb6-4 - View
Fragaria x ananassa FAN05G0474 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Fvb6-3 + View
Fragaria x ananassa FAN09G0455 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Fvb6-2 + View
Fragaria vesca FvH4_6g16220 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Fvb6 - View
Gossypium hirsutum Gohir.D09G143300 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) D09 + View
Gossypium hirsutum Gohir.D04G110800 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) D04 + View
Gossypium hirsutum Gohir.A04G072300 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) A04 + View
Gossypium hirsutum Gohir.A09G147700 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) A09 + View
Glycine max Glyma.03G182800 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Gm03 - View
Glycine max Glyma.12G177100 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Gm12 - View
Glycine max Glyma.11G194900 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Gm11 + View
Glycine max Glyma.12G079202 PTHR23077//PTHR23077:SF79 - AAA-FAMILY ATPASE // CELL DIVISION CONTROL PROTEIN 48 HOMOLOG A-RELATED Gm12 - View
Glycine max Glyma.13G143600 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Gm13 + View
Glycine max Glyma.10G057100 PF00004//PF02359//PF02933//PF05496//PF07724 - ATPase family associated with various cellular activities (AAA) (AAA) // Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) // Cell division protein 48 (CDC48), domain 2 (CDC48_2) // Holliday junction DNA helicase ruvB N-terminus (RuvB_N) // AAA domain (Cdc48 subfamily) (AAA_2) Gm10 + View
Glycine max Glyma.19G183400 PF00004//PF02359//PF02933//PF05496//PF07724 - ATPase family associated with various cellular activities (AAA) (AAA) // Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) // Cell division protein 48 (CDC48), domain 2 (CDC48_2) // Holliday junction DNA helicase ruvB N-terminus (RuvB_N) // AAA domain (Cdc48 subfamily) (AAA_2) Gm19 - View
Gossypium raimondii Gorai.006G164800 Chr06 + View
Gossypium raimondii Gorai.009G415000 Chr09 + View
Lupinus albus Lalb_Chr02g0155911 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Lalb_Chr02 + View
Lupinus albus Lalb_Chr25g0289011 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Lalb_Chr25 + View
Lotus japonicus Lj1g0010086 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) chr1 + View
Lotus japonicus Lj5g0027153 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) chr5 + View
Lonicera japonica Lj3C984T7 GWHAAZE00000003 - View
Lactuca sativa Lsat_1_v5_gn_1_52061 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Lsat_1_v8_lg_1 + View
Lactuca sativa Lsat_1_v5_gn_2_106721 Lsat_1_v8_lg_2 + View
Malus domestica MD04G1094400 ATPase Chr04 + View
Malus domestica MD03G1125200 ATPase Chr03 - View
Malus domestica MD12G1114300 ATPase Chr12 + View
Manihot esculenta Manes.09G067260 Chromosome09 + View
Manihot esculenta Manes.08G009500 Chromosome08 - View
Manihot esculenta Manes.11G150300 Chromosome11 - View
Manihot esculenta Manes.04G015800 Chromosome04 + View
Medicago truncatula Medtr1g063380 ATPase, AAA-type, CDC48 protein chr1 + View
Medicago truncatula Medtr7g101870 ATPase, AAA-type, CDC48 protein chr7 - View
Medicago truncatula Medtr2g095210 ATPase, AAA-type, CDC48 protein chr2 + View
Nicotiana tabacum Nitab4.5_0000106g0380 ATPase, AAA-type, conserved site, CDC48, N-terminal subdomain, CDC48, domain 2, P-loop containing nucleoside triphosphate hydrolase, Aspartate decarboxylase-like domain, ATPase, AAA-type, core, AAA+ ATPase domain Nitab4.5_0000106 - View
Nicotiana tabacum Nitab4.5_0000101g0430 ATPase, AAA-type, conserved site, CDC48, N-terminal subdomain, Aspartate decarboxylase-like domain, P-loop containing nucleoside triphosphate hydrolase, CDC48, domain 2, AAA+ ATPase domain, ATPase, AAA-type, core, AAA ATPase, CDC48 family Nitab4.5_0000101 - View
Olea europaea Oeu016981.1 chr2 + View
Punica granatum PGR004G0369 NC_045131.1 + View
Punica granatum PGR142G2465 NC_045128.1 - View
Prunus persica Prupe.6G233700 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Pp06 + View
Prunus persica Prupe.6G107800 PF02359//PF02933//PF05496 - Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) // Cell division protein 48 (CDC48), domain 2 (CDC48_2) // Holliday junction DNA helicase ruvB N-terminus (RuvB_N) Pp06 - View
Pisum sativum Psat6g073160 ATPase family associated with various cellular activities (AAA) chr6LG2 + View
Papaver somniferum PSO063G2537 NC_039364.1 - View
Populus trichocarpa Potri.006G125500 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Chr06 + View
Populus trichocarpa Potri.016G091600 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Chr16 - View
Phaseolus vulgaris Phvul.007G149366 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Chr07 + View
Phaseolus vulgaris Phvul.011G083800 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Chr11 - View
Quercus lobata QL07p043685 7 + View
Rosa chinensis RcHm_v2.0_Chr3g0470061 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim13G0098600 chr13 - View
Salvia bowleyana SalBow5G2911 GWHASIU00000003 + View
Salvia bowleyana SalBow5G5694 GWHASIU00000003 + View
Salix brachista Sabra06G0099100 GWHAAZH00000006 + View
Salix brachista Sabra16G0097300 GWHAAZH00000016 - View
Simmondsia chinensis Sc20g0005410 GWHAASQ00000020 - View
Sechium edule Sed0007648 LG03 - View
Sechium edule Sed0003418 LG14 + View
Sechium edule Sed0027845 LG04 - View
Sechium edule Sed0009250 LG02 + View
Solanum lycopersicum Solyc09g008070.4 Cell division cycle protein 48-like protein (AHRD V3.3 *** A0A2G3BJ43_CAPCH) SL4.0ch09 + View
Solanum lycopersicum Solyc06g074980.3 Cell division cycle protein 48-like protein (AHRD V3.3 *** A0A1U8H311_CAPAN) SL4.0ch06 + View
Schrenkiella parvula Sp6g39400 K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) ch6-6 + View
Solanum pennellii Sopen09g002870 Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean), ATPase, AAA-type, CDC48 protein | FUNCTIONS IN: protein binding, ATPase activity | LOCATED IN: cell wall | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core , ATPase, AAA-type, core , ATPase, AAA-type, conserved site , Aspartate decarboxylase-like fold , Cell division protein 48, CDC48, domain 2 , ATPase, AAA-type, VAT, N-terminal , ATPase, AAA-type, CDC48 | BEST Arabidopsis thaliana protein match is: cell division cycle 48 Spenn-ch09 + View
Solanum pennellii Sopen11g028560 Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper), ATPase, AAA-type, CDC48 protein | FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding | INVOLVED IN: response to cadmium ion | LOCATED IN: cytosol, nucleolus, plasma membrane | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core , ATPase, AAA-type, core , ATPase, AAA-type, conserved site , Aspartate decarboxylase-like fold , Cell division protein 48, CDC48, domain 2 , ATPase, AAA-type, VAT, N-terminal , ATPase, AAA-type, CDC48 | BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein Spenn-ch11 - View
Solanum pennellii Sopen06g031380 Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper), ATPase, AAA-type, CDC48 protein | FUNCTIONS IN: protein binding, ATPase activity | LOCATED IN: cell wall | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core , ATPase, AAA-type, core , ATPase, AAA-type, conserved site , Aspartate decarboxylase-like fold , Cell division protein 48, CDC48, domain 2 , ATPase, AAA-type, VAT, N-terminal , ATPase, AAA-type, CDC48 | BEST Arabidopsis thaliana protein match is: cell division cycle 48 Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG400021556 Transitional endoplasmic reticulum ATPase ST4.03ch09 - View
Trochodendron aralioides TAR623G1281 group7 + View
Trochodendron aralioides TAR369G0240 group18 + View
Trochodendron aralioides TAR636G1007 group1 - View
Trochodendron aralioides TAR633G2764 group2 + View
Theobroma cacao Thecc.05G064700 ATPase Chromosome_5 - View
Theobroma cacao Thecc.09G347800 ATPase Chromosome_9 - View
Tarenaya hassleriana THA.LOC104826910 cell division control protein 48 homolog E NW_010967707.1 - View
Tarenaya hassleriana THA.LOC104816345 cell division control protein 48 homolog E-like NW_010965775.1 - View
Trifolium pratense TPR.G11584 Tp57577_TGAC_v2_LG7 - View
Trifolium pratense TPR.G9362 Tp57577_TGAC_v2_scaf_558 - View
Tripterygium wilfordii TWI74G0493 NC_052234.1 - View
Tripterygium wilfordii TWI53G1848 NC_052244.1 + View
Vigna mungo VMungo0720G2390 CM024071.1 - View
Vitis vinifera GSVIVG01025723001 chr8 + View