Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
arahy.Tifrunner.gnm1.ann1.JA81W4 PF00041//PF07227 - Fibronectin type III domain (fn3) // PHD - plant homeodomain finger protein (PHD_Oberon) arahy.Tifrunner.gnm1.Arahy.13 + View
arahy.Tifrunner.gnm1.ann1.G2DL39 PTHR23264//PTHR23264:SF29 - NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED // PROTEIN HIGH CHLOROPHYLL FLUORESCENCE 101 arahy.Tifrunner.gnm1.Arahy.15 - View
arahy.Tifrunner.gnm1.ann1.H7I9KA PF00041//PF07227 - Fibronectin type III domain (fn3) // PHD - plant homeodomain finger protein (PHD_Oberon) arahy.Tifrunner.gnm1.Arahy.05 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr7.1304 chr7 - View
Actinidia chinensis Actinidia20341 Lachesis_group18 - View
Actinidia chinensis Actinidia32693 Lachesis_group25 - View
Arabidopsis lyrata AL3G39860 scaffold_3 - View
Amaranthus hybridus Ah.14g081540 VIN3-like protein 1 (Protein VERNALIZATION 5) AmaHy_arrow1_Scaffold_14 - View
Amaranthus hybridus Ah.10g029140 Fe-S cluster assembly factor HCF101, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 101 homolog) AmaHy_arrow1_Scaffold_10 - View
Aquilegia oxysepala Aqoxy7G01821 CHR07 + View
Arabidopsis thaliana AT3G24430 ATP binding protein Encodes chloroplast protein HCF101 (high chlorophyll fluorescence 101). Serves as a chloroplast scaffold protein that specifically assembles [4Fe-4S] clusters and transfers them to the chloroplast membrane and soluble target proteins. HIGH-CHLOROPHYLL-FLUORESCENCE 101 (HCF101)%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mrp%2C conserved site (InterPro:IPR000808)%2C Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase%2C N-terminal (InterPro:IPR010376)%2C Protein of unknown function DUF59 (InterPro:IPR002744)%2C ATPase-like%2C ParA/MinD (InterPro:IPR019591)%3B BEST Arabidopsis thaliana protein match is: IND1(iron-sulfur protein required for NADH dehydrogenase)-like (TAIR:AT4G19540.1)%3B Has 16372 Blast hits to 16340 proteins in 2775 species: Archae - 600%3B Bacteria - 10162%3B Metazoa - 436%3B Fungi - 428%3B Plants - 202%3B Viruses - 0%3B Other Eukaryotes - 4544 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC06g35700 ChrC06 - View
Brassica napus C07p11890 C07 + View
Brassica oleracea BolC7t41659H C7 + View
Beta vulgaris EL10Ac8g18527 PF07227 - PHD - plant homeodomain finger protein (PHD_Oberon) Chr8_EL10_PGA_scaffold4 + View
Camellia sinensis var. sinensis CSS0005642 ATP binding isoform 1 [Theobroma cacao] Chr6 - View
Camellia sinensis var. sinensis CSS0031088 PREDICTED: VIN3-like protein 1 isoform X1 [Prunus mume] Chr14 + View
Cannabis sativa CANSAT56G3015 NC_044371.1 - View
Cicer arietinum L. Ca_17346_v3 Ca_LG6_v3 - View
Cicer arietinum L. Ca_25514_v3 Ca_LG8_v3 - View
Corylus avellana Haze_25686 Similar to HCF101: Fe-S cluster assembly factor HCF101, chloroplastic (Arabidopsis thaliana OX%3D3702) 8 - View
Coffea canephora Cc06_g09380 Putative Protein mrp homolog chr6 - View
Citrus clementina Ciclev10007988m.g scaffold_1 - View
Carpinus fangiana Cfa003286 Cfa01 + View
Cardamine hirsuta CARHR100520 Cytosolic Fe-S cluster assembly factor nbp35 Chr3 - View
Carya illinoinensis CiPaw.03G234700 PF00041 - Fibronectin type III domain (fn3) Chr03 + View
Carya illinoinensis CiPaw.04G166800 PF00041//PF07227 - Fibronectin type III domain (fn3) // PHD - plant homeodomain finger protein (PHD_Oberon) Chr04 + View
Citrullus lanatus ClCG11G002600 Vernalization insensitive 3 CG_Chr11 + View
Citrullus lanatus ClCG06G010350 Protein VERNALIZATION INSENSITIVE 3 CG_Chr06 + View
Cucumis melo MELO3C025316.2 Cytosolic Fe-S cluster assembly factor NBP35 chr02 + View
Cucumis melo MELO3C004546.2 VIN3-like protein 1 chr05 - View
Corchorus olitorius COL.COLO4_34883 hypothetical protein AWUE01022458.1 - View
Carica papaya Cpa.g.sc23.132 supercontig_23 + View
Chenopodium quinoa AUR62011018 VIL1: VIN3-like protein 1 C_Quinoa_Scaffold_3799 + View
Capsella rubella Carub.0003s2473 PTHR23264//PTHR23264:SF29 - NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED // PROTEIN HIGH CHLOROPHYLL FLUORESCENCE 101 scaffold_3 - View
Cucumis sativus L. CsaV3_2G002420 Vin3-like protein 1 chr2 + View
Cucumis sativus L. CsaV3_1G030800 VIN3-like protein 1 chr1 + View
Daucus carota DCAR_012085 hypothetical protein DCARv2_Chr3 + View
Daucus carota DCAR_010441 hypothetical protein DCARv2_Chr3 - View
Davidia involucrata Dinv36606 GWHABJS00000001 - View
Davidia involucrata Dinv41580 GWHABJS00000013 - View
Durio zibethinus Duzib187G1915 NW_019167860.1 - View
Erigeron canadensis ECA234G0384 Conyza_canadensis_scaffold:4 + View
Eucalyptus grandis Eucgr.C01072 Chr03 + View
Eucalyptus grandis Eucgr.C03965 Chr03 + View
Eutrema salsugineum Thhalv10002445m.g PTHR21736:SF17 - VIN3-LIKE PROTEIN 1 scaffold_4 + View
Fragaria x ananassa FAN26G2813 PF00041//PF01656//PF01883//PF06155//PF07227 - Fibronectin type III domain (fn3) // CobQ/CobB/MinD/ParA nucleotide binding domain (CbiA) // Domain of unknown function DUF59 (DUF59) // Protein of unknown function (DUF971) (DUF971) // PHD - plant homeodomain finger protein (PHD_Oberon) Fvb1-2 - View
Fragaria x ananassa FAN26G0422 PF00041//PF01656//PF01883//PF06155//PF07227 - Fibronectin type III domain (fn3) // CobQ/CobB/MinD/ParA nucleotide binding domain (CbiA) // Domain of unknown function DUF59 (DUF59) // Protein of unknown function (DUF971) (DUF971) // PHD - plant homeodomain finger protein (PHD_Oberon) Fvb1-2 - View
Fragaria x ananassa FAN28G1747 PF00041//PF07227 - Fibronectin type III domain (fn3) // PHD - plant homeodomain finger protein (PHD_Oberon) Fvb1-1 - View
Fragaria x ananassa FAN23G0415 PF00041//PF07227 - Fibronectin type III domain (fn3) // PHD - plant homeodomain finger protein (PHD_Oberon) Fvb1-3 + View
Fragaria x ananassa FAN19G0453 PTHR23264//PTHR23264:SF29 - NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED // PROTEIN HIGH CHLOROPHYLL FLUORESCENCE 101 Fvb1-4 - View
Fragaria vesca FvH4_1g05280 PF00041 - Fibronectin type III domain (fn3) Fvb1 + View
Gossypium hirsutum Gohir.A05G021400 PTHR23264//PTHR23264:SF29 - NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED // PROTEIN HIGH CHLOROPHYLL FLUORESCENCE 101 A05 - View
Gossypium hirsutum Gohir.D05G022766 PF01883//PF06155//PF10609 - Domain of unknown function DUF59 (DUF59) // Protein of unknown function (DUF971) (DUF971) // NUBPL iron-transfer P-loop NTPase (ParA) D05 - View
Glycine max Glyma.05G232400 PTHR21736//PTHR21736:SF17 - VERNALIZATION-INSENSITIVE PROTEIN 3 // VIN3-LIKE PROTEIN 1 Gm05 + View
Glycine max Glyma.07G089000 PTHR21736//PTHR21736:SF17 - VERNALIZATION-INSENSITIVE PROTEIN 3 // VIN3-LIKE PROTEIN 1 Gm07 + View
Glycine max Glyma.09G187800 PTHR23264//PTHR23264:SF29 - NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED // PROTEIN HIGH CHLOROPHYLL FLUORESCENCE 101 Gm09 - View
Glycine max Glyma.08G039800 PTHR21736//PTHR21736:SF17 - VERNALIZATION-INSENSITIVE PROTEIN 3 // VIN3-LIKE PROTEIN 1 Gm08 + View
Gossypium raimondii Gorai.009G023100 Chr09 - View
Lupinus albus Lalb_Chr05g0222661 PF00041 - Fibronectin type III domain (fn3) Lalb_Chr05 - View
Lupinus albus Lalb_Chr14g0371351 PF07227 - PHD - plant homeodomain finger protein (PHD_Oberon) Lalb_Chr14 - View
Lupinus albus Lalb_Chr09g0331131 PF00041 - Fibronectin type III domain (fn3) Lalb_Chr09 - View
Lupinus albus Lalb_Chr16g0387981 PF07227 - PHD - plant homeodomain finger protein (PHD_Oberon) Lalb_Chr16 - View
Lotus japonicus Lj4g0023018 PF07227 - PHD - plant homeodomain finger protein (PHD_Oberon) chr4 - View
Lotus japonicus Lj2g0007105 PF07227 - PHD - plant homeodomain finger protein (PHD_Oberon) chr2 + View
Lonicera japonica Lj7C645G9 GWHAAZE00000007 - View
Lactuca sativa Lsat_1_v5_gn_8_93421 PTHR21736:SF17 - VIN3-LIKE PROTEIN 1 Lsat_1_v8_lg_8 + View
Malus domestica MD15G1189100 Fibronectin type III domain-containing protein Chr15 + View
Manihot esculenta Manes.16G070800 Chromosome16 - View
Medicago truncatula Medtr6g086600 nucleotide-binding protein chr6 - View
Nelumbo nucifera Nn8g39256 chr8 + View
Petunia axillaris Peaxi162Scf00560g00515 Fibronectin type III domain-containing protein Peaxi162Scf00560 + View
Petunia axillaris Peaxi162Scf00546g00322 ATP binding Peaxi162Scf00546 - View
Prunus persica Prupe.7G227600 PTHR23264:SF29 - PROTEIN HIGH CHLOROPHYLL FLUORESCENCE 101 Pp07 - View
Pisum sativum Psat1g039560 NUBPL iron-transfer P-loop NTPase chr1LG6 - View
Pisum sativum Psat7g014080 PHD - plant homeodomain finger protein chr7LG7 + View
Populus trichocarpa Potri.018G076600 PTHR23264//PTHR23264:SF29 - NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED // PROTEIN HIGH CHLOROPHYLL FLUORESCENCE 101 Chr18 - View
Phaseolus vulgaris Phvul.002G314700 Chr02 + View
Phaseolus vulgaris Phvul.004G160900 PTHR23264:SF29 - PROTEIN HIGH CHLOROPHYLL FLUORESCENCE 101 Chr04 - View
Quercus lobata QL02p085950 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr2g0091001 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim03G0244500 chr03 + View
Rhododendron simsii Rhsim01G0091800 chr01 - View
Salix brachista Sabra18G0064600 GWHAAZH00000018 - View
Simmondsia chinensis Sc08g0007210 GWHAASQ00000008 - View
Simmondsia chinensis Sc18g0001070 GWHAASQ00000018 - View
Sechium edule Sed0012141 LG12 - View
Sechium edule Sed0017287 LG11 + View
Solanum lycopersicum Solyc12g007010.2 Iron-sulfur cluster carrier protein (AHRD V3.3 *** A0A2T0U724_9SPHI) SL4.0ch12 + View
Schrenkiella parvula Sp3g22200 PF00041//PF07227 - Fibronectin type III domain (fn3) // PHD - plant homeodomain finger protein (PHD_Oberon) ch3-2 - View
Solanum tuberosum PGSC0003DMG400000383 Mrp protein ST4.03ch12 - View
Selenicereus undatus Hund26130 Scaffold_2055 - View
Selenicereus undatus Hund09189 Scaffold_33676 - View
Trochodendron aralioides TAR624G0463 group9 + View
Trochodendron aralioides TAR626G1765 group3 + View
Trochodendron aralioides TAR636G2401 group1 - View
Theobroma cacao Thecc.09G114000 Fibronectin type III domain-containing protein Chromosome_9 + View
Tarenaya hassleriana THA.LOC104808749 fe-S cluster assembly factor HCF101%2C chloroplastic NW_010964923.1 - View
Trifolium pratense TPR.G21710 Tp57577_TGAC_v2_LG3 + View
Tripterygium wilfordii TWI32G1189 NC_052254.1 - View
Tripterygium wilfordii TWI63G1087 NC_052240.1 - View
Tripterygium wilfordii TWI34G1328 NC_052235.1 + View
Vaccinium macrocarpon vmacro06201 Similar to VIL1: VIN3-like protein 1 (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro20665 Similar to VIL1: VIN3-like protein 1 (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0464G1974 CM024077.1 - View
Vigna mungo VMungo0251G3045 CM024069.1 + View
Vitis vinifera GSVIVG01015423001 chr11 + View