Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen09g021250hypothetical proteinSpenn-ch09+View
Sopen11g009630RNA-directed DNA polymerase homolog (Reverse transcriptase homolog) - Oenothera bertiana (Berteros evening primrose), hypothetical protein | DNA/RNA polymerases superfamily protein.Spenn-ch11+View
Sopen00g005220hypothetical proteinSpenn-ch00-View
Sopen07g009690hypothetical proteinSpenn-ch07-View
Sopen10g025720hypothetical proteinSpenn-ch10-View
Sopen05g012930hypothetical proteinSpenn-ch05+View
Sopen09g024400hypothetical protein | GAG/POL/ENV polyprotein.Spenn-ch09-View
Sopen01g017190hypothetical proteinSpenn-ch01-View
Sopen09g023200hypothetical proteinSpenn-ch09+View
Sopen09g012850hypothetical proteinSpenn-ch09-View
Sopen03g009210hypothetical proteinSpenn-ch03-View
Sopen10g024170hypothetical proteinSpenn-ch10-View
Sopen05g011120hypothetical proteinSpenn-ch05-View
Sopen10g020850hypothetical proteinSpenn-ch10+View
Sopen06g014290Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), Reverse transcriptase, RNA-dependent DNA polymerase, Encodes a cysteine-rich receptor-like protein kinase. | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (CRK8) | FUNCTIONS IN: kinase activity | INVOLVED IN: protein amino acid phosphorylation | CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site , Reverse transcriptase, RNA-dependent DNA polymerase , Serine/threonine-protein kinase domain , Protein of unknown function DUF26 , Serine/threonine-protein kinase-like domain , Serine/threonine-protein kinase, active site , Protein kinase-like domain , Protein kinase, catalytic domain , Tyrosine-protein kinase, catalytic domain | BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 6Spenn-ch06-View
Sopen09g016880hypothetical proteinSpenn-ch09-View
Sopen05g027810hypothetical proteinSpenn-ch05-View
Sopen10g021810hypothetical proteinSpenn-ch10+View
Sopen01g010600hypothetical proteinSpenn-ch01+View
Sopen09g010920hypothetical proteinSpenn-ch09-View
Sopen06g005270hypothetical proteinSpenn-ch06+View
Sopen00g005870hypothetical proteinSpenn-ch00-View
Sopen07g019820hypothetical proteinSpenn-ch07+View
Sopen02g008620hypothetical proteinSpenn-ch02-View
Sopen12g008440hypothetical proteinSpenn-ch12+View
Sopen01g013240hypothetical proteinSpenn-ch01-View
Sopen03g016680hypothetical proteinSpenn-ch03-View
Sopen07g019170Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), Encodes a cysteine-rich receptor-like protein kinase. | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (CRK8) | FUNCTIONS IN: kinase activity | INVOLVED IN: protein amino acid phosphorylation | CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site , Reverse transcriptase, RNA-dependent DNA polymerase , Serine/threonine-protein kinase domain , Protein of unknown function DUF26 , Serine/threonine-protein kinase-like domain , Serine/threonine-protein kinase, active site , Protein kinase-like domain , Protein kinase, catalytic domain , Tyrosine-protein kinase, catalytic domain | BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 6Spenn-ch07-View
Sopen01g018090hypothetical proteinSpenn-ch01+View
Sopen09g008080hypothetical proteinSpenn-ch09-View
Sopen01g024110hypothetical proteinSpenn-ch01+View
Sopen05g014210hypothetical proteinSpenn-ch05-View
Sopen06g009380hypothetical proteinSpenn-ch06-View
Sopen08g018120hypothetical proteinSpenn-ch08-View
Sopen10g025400hypothetical proteinSpenn-ch10-View
Sopen06g010870Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. | VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1 (VAP27-1) | FUNCTIONS IN: protein binding | INVOLVED IN: intracellular transport | LOCATED IN: in 7 components | EXPRESSED IN: 27 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: PapD-like , Major sperm protein , Vesicle-associated membrane protein | BEST Arabidopsis thaliana protein match is: plant VAP homolog 12Spenn-ch06+View
Sopen10g021490hypothetical proteinSpenn-ch10+View
Sopen00g006350unknown proteinSpenn-ch00-View
Sopen06g004680hypothetical proteinSpenn-ch06+View
Sopen09g022250hypothetical proteinSpenn-ch09+View
Sopen08g016860hypothetical protein | DNA/RNA polymerases superfamily protein.Spenn-ch08-View
Sopen07g012060hypothetical proteinSpenn-ch07-View
Sopen01g008890hypothetical proteinSpenn-ch01-View
Sopen06g011410hypothetical proteinSpenn-ch06-View
Sopen07g017480hypothetical proteinSpenn-ch07+View
Sopen09g025820hypothetical proteinSpenn-ch09-View
Sopen09g020520hypothetical protein | GAG/POL/ENV polyprotein.Spenn-ch09-View
Sopen00g004260hypothetical proteinSpenn-ch00-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Cannabis sativaCANSAT01G0388NC_044373.1+View
Erigeron canadensisECA246G2361Conyza_canadensis_scaffold:8-View
Erigeron canadensisECA238G0353Conyza_canadensis_scaffold:6+View
Erigeron canadensisECA233G0633Conyza_canadensis_scaffold:1+View
Erigeron canadensisECA240G1418Conyza_canadensis_scaffold:5-View
Erigeron canadensisECA236G0909Conyza_canadensis_scaffold:3-View
Erigeron canadensisECA236G3103Conyza_canadensis_scaffold:3+View
Erigeron canadensisECA232G2659Conyza_canadensis_scaffold:2+View
Erigeron canadensisECA232G2025Conyza_canadensis_scaffold:2-View
Erigeron canadensisECA247G0674Conyza_canadensis_scaffold:7-View
Erigeron canadensisECA246G4341Conyza_canadensis_scaffold:8-View
Erigeron canadensisECA232G2896Conyza_canadensis_scaffold:2-View
Erigeron canadensisECA234G1566Conyza_canadensis_scaffold:4+View
Erigeron canadensisECA247G0354Conyza_canadensis_scaffold:7-View
Erigeron canadensisECA236G0447Conyza_canadensis_scaffold:3+View
Erigeron canadensisECA246G2806Conyza_canadensis_scaffold:8-View
Erigeron canadensisECA240G3981Conyza_canadensis_scaffold:5-View
Erigeron canadensisECA247G2074Conyza_canadensis_scaffold:7-View
Erigeron canadensisECA248G2716Conyza_canadensis_scaffold:9+View
Erigeron canadensisECA233G3797Conyza_canadensis_scaffold:1+View
Erigeron canadensisECA232G4319Conyza_canadensis_scaffold:2+View
Erigeron canadensisECA236G4148Conyza_canadensis_scaffold:3+View
Erigeron canadensisECA246G2477Conyza_canadensis_scaffold:8+View
Erigeron canadensisECA247G1933Conyza_canadensis_scaffold:7-View
Erigeron canadensisECA232G3362Conyza_canadensis_scaffold:2-View
Erigeron canadensisECA234G0358Conyza_canadensis_scaffold:4+View
Papaver somniferumPSO478G2382NC_039361.1-View
Sequoiadendron giganteumSEGI_08957chr1+View
Sapria himalayanaSHI03559scaffold5_19632047+View
Sapria himalayanaSHI22599scaffold31_7046607+View
Sapria himalayanaSHI26148scaffold42_4718812+View
Sapria himalayanaSHI01950scaffold3_21451142+View
Sapria himalayanaSHI11727scaffold12_13443846-View
Solanum tuberosumPGSC0003DMG400042025Integrase core domain containing proteinST4.03ch11-View
Solanum tuberosumPGSC0003DMG400046977Integrase core domain containing proteinST4.03ch02+View
Solanum tuberosumPGSC0003DMG400035569Integrase core domain containing proteinST4.03ch12-View
Solanum tuberosumPGSC0003DMG400012078PolST4.03ch11+View
Solanum tuberosumPGSC0003DMG400037391Integrase core domain containing proteinST4.03ch02+View
Solanum tuberosumPGSC0003DMG400034824Gene of unknown functionST4.03ch01+View
Tripterygium wilfordiiTWI31G0852NC_052233.1+View