Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold44G16615 scaffold44 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G11330 LG-5 - View
Actinidia chinensis Actinidia07778 Lachesis_group21 + View
Actinidia chinensis Actinidia01015 Lachesis_group3 + View
Arabidopsis lyrata AL6G10070 scaffold_6 - View
Avicennia marina MSTRG.27250 ScioBoG_8578_HRSCAF_8617 - View
Avicennia marina MSTRG.8389 ScioBoG_102841_HRSCAF_103114 + View
Amaranthus hybridus Ah.15g089800 RING finger and transmembrane domain-containing protein 2 (Transmembrane protein 118) AmaHy_arrow1_Scaffold_15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TI4L00 KOG4638 - Uncharacterized conserved protein arahy.Tifrunner.gnm1.Arahy.20 + View
Arabidopsis thaliana AT5G01960 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G65040.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 + View
Camellia sinensis var. sinensis CSS0037181 PREDICTED: RING finger and transmembrane domain-containing protein 1 [Vitis vinifera] Contig987 + View
Cannabis sativa CANSAT56G2340 NC_044371.1 + View
Cicer arietinum L. Ca_07795_v3 Ca_LG3_v3 + View
Cicer arietinum L. Ca_16851_v3 Ca_LG5_v3 - View
Corylus avellana Haze_17379 Similar to HRD1B: ERAD-associated E3 ubiquitin-protein ligase HRD1B (Arabidopsis thaliana OX%3D3702) 11 + View
Corylus avellana Haze_24490 Similar to HRD1B: ERAD-associated E3 ubiquitin-protein ligase HRD1B (Arabidopsis thaliana OX%3D3702) 6 + View
Coffea canephora Cc02_g05080 RING/U-box superfamily protein chr2 - View
Citrus clementina Ciclev10031602m.g scaffold_4 + View
Ceratophyllum demersum CDE06G0435 4 - View
Ceratophyllum demersum CDE12G0670 10 - View
Ceratophyllum demersum CDE04G0087 2 - View
Carpinus fangiana Cfa001186 Cfa01 - View
Carya illinoinensis CiPaw.13G060400 PTHR15860//PTHR15860:SF4 - UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr13 - View
Citrullus lanatus ClCG07G005290 RING finger protein CG_Chr07 - View
Cucumis melo MELO3C020174.2 RING finger and transmembrane domain-containing protein 2 chr10 + View
Cucumis sativus L. CsaV3_5G011140 RING finger and transmembrane domain-containing protein 2 chr5 + View
Daucus carota DCAR_014657 hypothetical protein DCARv2_Chr4 + View
Davidia involucrata Dinv34510 GWHABJS00000009 - View
Davidia involucrata Dinv21867 GWHABJS00000004 - View
Durio zibethinus Duzib168G0789 NW_019168159.1 - View
Durio zibethinus Duzib128G1256 NW_019168481.1 + View
Durio zibethinus Duzib114G0182 NW_019167926.1 + View
Erigeron canadensis ECA232G2945 Conyza_canadensis_scaffold:2 + View
Erigeron canadensis ECA236G2954 Conyza_canadensis_scaffold:3 + View
Erigeron canadensis ECA233G4223 Conyza_canadensis_scaffold:1 - View
Eucalyptus grandis Eucgr.G03167 Chr07 + View
Eucalyptus grandis Eucgr.K01301 Chr11 + View
Erythranthe guttata Migut.F00563 scaffold_6 - View
Erythranthe guttata Migut.F01224 scaffold_6 - View
Fragaria x ananassa FAN10G3107 KOG4638 - Uncharacterized conserved protein Fvb7-1 - View
Fragaria x ananassa FAN01G1329 KOG4638 - Uncharacterized conserved protein Fvb7-4 - View
Fragaria x ananassa FAN06G3845 KOG4638 - Uncharacterized conserved protein Fvb7-2 + View
Fragaria vesca FvH4_7g26260 KOG4638 - Uncharacterized conserved protein Fvb7 + View
Glycine max Glyma.06G140600 PF00097//PF13639 - Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) // Ring finger domain (zf-RING_2) Gm06 - View
Glycine max Glyma.04G224200 PTHR15860//PTHR15860:SF4 - UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Gm04 + View
Helianthus annuus HanXRQChr14g0460971 Putative zinc finger, RING/FYVE/PHD-type HanXRQChr14 + View
Helianthus annuus HanXRQChr15g0493621 Putative zinc finger, RING/FYVE/PHD-type HanXRQChr15 - View
Helianthus annuus HanXRQChr08g0221701 Probable RING/U-box superfamily protein HanXRQChr08 + View
Helianthus annuus HanXRQChr09g0252401 Probable RING finger and transmembrane domain-containing protein 1 HanXRQChr09 + View
Lupinus albus Lalb_Chr10g0102891 PTHR15860//PTHR15860:SF4 - UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Lalb_Chr10 + View
Lotus japonicus Lj1g0009573 PTHR15860//PTHR15860:SF4 - UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN // SUBFAMILY NOT NAMED chr1 + View
Lonicera japonica Lj1A969G91 GWHAAZE00000001 + View
Lonicera japonica Lj2A1104G70 GWHAAZE00000002 + View
Lonicera japonica Lj2A56T93 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_8_11301 Lsat_1_v8_lg_8 - View
Lactuca sativa Lsat_1_v5_gn_9_60380 Lsat_1_v8_lg_9 - View
Malus domestica MD01G1171400 RING/U-box superfamily protein Chr01 + View
Malus domestica MD07G1237600 RING/U-box superfamily protein Chr07 + View
Medicago truncatula Medtr3g093660 RING zinc finger protein, putative chr3 - View
Nicotiana tabacum Nitab4.5_0000171g0360 Zinc finger, RING-type, Zinc finger, RING-type, conserved site, Zinc finger, RING/FYVE/PHD-type Nitab4.5_0000171 + View
Olea europaea Oeu044177.3 chr1 - View
Olea europaea Oeu008101.1 chr12 + View
Olea europaea Oeu001375.1 chr11 - View
Petunia axillaris Peaxi162Scf00304g00833 RING finger and transmembrane domain-containing protein 2 Peaxi162Scf00304 + View
Petunia axillaris Peaxi162Scf00073g02129 RING finger and transmembrane domain-containing protein 2 Peaxi162Scf00073 - View
Punica granatum PGR142G1380 NC_045128.1 + View
Prunus persica Prupe.2G266800 PTHR15860 - UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN Pp02 + View
Pisum sativum Psat5g069840 Zinc finger + C3HC4 type (RING finger) chr5LG3 + View
Populus trichocarpa Potri.019G132201 PTHR15860//PTHR15860:SF4 - UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr19 + View
Phaseolus vulgaris Phvul.009G041900 PTHR15860 - UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN Chr09 - View
Rosa chinensis RcHm_v2.0_Chr1g0372711 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim09G0186900 chr09 + View
Salix brachista Sabra13G0128000 GWHAAZH00000013 + View
Sechium edule Sed0000854 LG04 + View
Sechium edule Sed0016641 LG04 - View
Solanum lycopersicum Solyc03g095450.3 RING/U-box superfamily protein (AHRD V3.3 *** Q8L610_ARATH) SL4.0ch03 - View
Schrenkiella parvula Sp6g41200 PTHR15860//PTHR15860:SF4 - UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN // SUBFAMILY NOT NAMED ch6-6 + View
Solanum pennellii Sopen06g014680 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | LOCATED IN: chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch06 - View
Solanum pennellii Sopen03g025430 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | LOCATED IN: chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG400027593 Conserved gene of unknown function ST4.03ch06 + View
Trochodendron aralioides TAR369G0671 group18 - View
Theobroma cacao Thecc.10G186700 RING/U-box superfamily protein Chromosome_10 + View
Theobroma cacao Thecc.09G365800 RING/U-box superfamily protein Chromosome_9 - View
Trifolium pratense TPR.G13961 Tp57577_TGAC_v2_scaf_417 - View
Tripterygium wilfordii TWI77G0643 NC_052236.1 + View
Vigna mungo VMungo1309G1060 CM024072.1 - View
Vanilla planifolia HPP92_017909 RING finger and transmembrane domain-containing protein 2 *** CM028158.1 - View
Vanilla planifolia HPP92_007545 RING finger and transmembrane domain-containing protein 2 *-* CM028152.1 + View