Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold18G08515 scaffold18 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G12740 LG-11 - View
Actinidia chinensis Actinidia08750 Lachesis_group6 + View
Actinidia chinensis Actinidia34316 Lachesis_group3 - View
Arabidopsis lyrata AL6G27860 scaffold_6 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.L5ELT1 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) arahy.Tifrunner.gnm1.Arahy.03 - View
Arabidopsis thaliana AT5G16840 binding partner of acd11 1 binding partner of acd11 1 (BPA1)%3B FUNCTIONS IN: oxidoreductase activity%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaC04g18842 ChrC04 - View
Brassica carinata BcaC03g18519 ChrC03 + View
Brassica napus A02p03810 A02 + View
Brassica napus A10p22390 A10 - View
Brassica napus C02p08620 C02 + View
Brassica napus C09p60240 C09 - View
Brassica oleracea BolC9t58857H C9 - View
Brassica oleracea BolC3t13423H C3 + View
Brassica oleracea BolC2t06778H C2 + View
Brassica rapa BraA10t44298Z A10 - View
Brassica rapa BraA02t05347Z A02 + View
Beta vulgaris EL10Ac3g05064 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Chr3_EL10_PGA_scaffold7 + View
Camellia sinensis var. sinensis CSS0044634 PREDICTED: uncharacterized protein LOC104217549 [Nicotiana sylvestris] Chr1 - View
Camellia sinensis var. sinensis CSS0034082 PREDICTED: uncharacterized protein LOC100244246 [Vitis vinifera] Chr7 - View
Citrus clementina Ciclev10021732m.g scaffold_3 - View
Ceratophyllum demersum CDE02G3752 1 + View
Cardamine hirsuta CARHR196320 RNA recognition motif-containing protein Chr6 - View
Carica papaya Cpa.g.sc43.92 supercontig_43 - View
Chenopodium quinoa AUR62002074 BPA1: Binding partner of ACD11 1 C_Quinoa_Scaffold_4480 - View
Chenopodium quinoa AUR62028187 Protein of unknown function C_Quinoa_Scaffold_2933 - View
Capsella rubella Carub.0006s1506 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) scaffold_6 + View
Daucus carota DCAR_010538 hypothetical protein DCARv2_Chr3 + View
Durio zibethinus Duzib177G0694 NW_019168004.1 - View
Durio zibethinus Duzib128G1876 NW_019168481.1 + View
Durio zibethinus Duzib106G1109 NW_019168492.1 + View
Erigeron canadensis ECA232G2679 Conyza_canadensis_scaffold:2 - View
Eucalyptus grandis Eucgr.K00081 Chr11 + View
Erythranthe guttata Migut.F00090 scaffold_6 + View
Eutrema salsugineum Thhalv10014416m.g PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) scaffold_2 + View
Fragaria x ananassa FAN01G2133 PF14259 - RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) Fvb7-4 + View
Fragaria x ananassa FAN10G0240 PF14259 - RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) Fvb7-1 - View
Fragaria vesca FvH4_7g34070 PF14259 - RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) Fvb7 - View
Gossypium hirsutum Gohir.A02G141000 PF14259 - RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) A02 - View
Gossypium hirsutum Gohir.D03G051500 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) D03 - View
Gossypium raimondii Gorai.003G053100 Chr03 - View
Hydrangea macrophylla Hma1.2p1_1680F.1_g297110 Hma1.2p1_1680F.1 + View
Lonicera japonica Lj1C1033T24 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_9_47681 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Lsat_1_v8_lg_9 - View
Malus domestica MD01G1236900 RNA-binding (RRM/RBD/RNP motifs) family protein Chr01 - View
Malus domestica MD07G1309500 RNA-binding (RRM/RBD/RNP motifs) family protein Chr07 - View
Nicotiana tabacum Nitab4.5_0000021g0620 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000021 - View
Olea europaea Oeu038093.1 chr12 - View
Petunia axillaris Peaxi162Scf00516g00664 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00516 + View
Petunia axillaris Peaxi162Scf00133g00613 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00133 + View
Punica granatum PGR142G2551 NC_045128.1 + View
Prunus persica Prupe.2G327200 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Pp02 - View
Quercus lobata QL09p023294 9 + View
Rosa chinensis RcHm_v2.0_Chr1g0384341 RcHm_v2.0_Chr1 - View
Rhododendron simsii Rhsim03G0222500 chr03 - View
Salvia bowleyana SalBow4G1577 GWHASIU00000008 - View
Simmondsia chinensis Sc19g0000120 GWHAASQ00000019 + View
Solanum lycopersicum Solyc03g097110.4 binding partner of ACD11 1 (AHRD V3.3 *** A0A1U8G5Z0_CAPAN) SL4.0ch03 - View
Solanum lycopersicum Solyc06g072770.3 Binding partner of acd11 1 (AHRD V3.3 *** A0A314L950_NICAT) SL4.0ch06 + View
Schrenkiella parvula Sp6g27280 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) ch6-6 - View
Solanum pennellii Sopen03g027850 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding | INVOLVED IN: oxidation reduction | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Aldo/keto reductase , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch03 - View
Solanum pennellii Sopen06g029150 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding | INVOLVED IN: oxidation reduction | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Aldo/keto reductase , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG400003159 Nucleic acid binding protein ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG400027035 Nucleic acid binding protein ST4.03ch06 + View
Trochodendron aralioides TAR374G1002 group12 - View
Trochodendron aralioides TAR375G0467 group15 - View
Theobroma cacao Thecc.05G215300 RNA-binding family protein Chromosome_5 - View
Vaccinium macrocarpon vmacro06520 Similar to BPA1: Binding partner of ACD11 1 (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro22179 Similar to BPA1: Binding partner of ACD11 1 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01024381001 chr16 + View