Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold184G39914scaffold184-View
SGA_v2.0_scaffold75G24799scaffold75+View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG1G21510LG-1-View
Acer truncatumAtru.chr3.3388chr3+View
Acer truncatumAtru.chr8.1641chr8+View
Actinidia chinensisActinidia24182Lachesis_group24+View
Actinidia chinensisActinidia07209Lachesis_group13+View
Arabidopsis lyrataAL6G13270scaffold_6+View
Avicennia marinaMSTRG.10350ScioBoG_13798_HRSCAF_13862-View
Avicennia marinaMSTRG.26653ScioBoG_52287_HRSCAF_52434+View
Avicennia marinaMSTRG.21067ScioBoG_26769_HRSCAF_26899+View
Avicennia marinaMSTRG.19226ScioBoG_25048_HRSCAF_25167-View
Aquilegia oxysepalaAqoxy2G01426CHR02+View
Aquilegia oxysepalaAqoxy1G00951CHR01+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.63G8L5K11276 - nucleophosmin 1 (NPM1)arahy.Tifrunner.gnm1.Arahy.08-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.VS5FH3PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDarahy.Tifrunner.gnm1.Arahy.13+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.DY7VNHPTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDarahy.Tifrunner.gnm1.Arahy.18-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.FWC0NEPTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDarahy.Tifrunner.gnm1.Arahy.06+View
Arabidopsis thalianaAT5G03740histone deacetylase 2C HD2-type histone deacetylase HDAC. Involved in the ABA and stress responses. Mediates transcriptional repression histone deacetylase 2C (HD2C)%3B FUNCTIONS IN: histone deacetylase activity%2C transcription repressor activity%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: response to water deprivation%2C response to salt stress%2C response to abscisic acid stimulus%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.2)%3B Has 47549 Blast hits to 20091 proteins in 1212 species: Archae - 111%3B Bacteria - 17827%3B Metazoa - 12467%3B Fungi - 4889%3B Plants - 1882%3B Viruses - 518%3B Other Eukaryotes - 9855 (source: NCBI BLink).Chr5+View
Brassica carinataBcaC06g32081ChrC06+View
Brassica napusA10p32360A10-View
Brassica napusC09p73180C09-View
Brassica oleraceaBolC9t60053HC9-View
Brassica rapaBraA10t45276ZA10-View
Beta vulgarisEL10Ac7g16997PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDChr7_EL10_PGA_scaffold5+View
Camellia sinensis var. sinensisCSS0049493PREDICTED: histone deacetylase HDT1 [Sesamum indicum]Chr10+View
Camellia sinensis var. sinensisCSS0011669PREDICTED: histone deacetylase HDT1-like [Sesamum indicum]Chr4+View
Camellia sinensis var. sinensisCSS0026506PREDICTED: histone deacetylase HDT1-like [Sesamum indicum]Chr11+View
Capsicum annuumCAN.G644.35PGAv.1.6.scaffold644+View
Cannabis sativaCANSAT80G0408NC_044372.1-View
Cicer arietinum L.Ca_08965_v3Ca_LG3_v3-View
Cicer arietinum L.Ca_01682_v3Ca_LG1_v3+View
Corylus avellanaHaze_23455Similar to HDT1: Histone deacetylase HDT1 (Solanum chacoense OX%3D4108)6+View
Corylus avellanaHaze_19531Similar to HDT1: Histone deacetylase HDT1 (Glycine max OX%3D3847)10-View
Coffea canephoraCc01_g09850Putative Histone deacetylase HDT3chr1+View
Coffea canephoraCc06_g05190Histone deacetylase HDT1chr6-View
Citrus clementinaCiclev10028932m.gscaffold_8+View
Citrus clementinaCiclev10012182m.gscaffold_6+View
Ceratophyllum demersumCDE06G24254+View
Ceratophyllum demersumCDE02G45501+View
Carpinus fangianaCfa016530Cfa07-View
Cardamine hirsutaCARHR209560histone deacetylase 2CChr6-View
Carya illinoinensisCiPaw.14G103900PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDChr14+View
Carya illinoinensisCiPaw.13G141200PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDChr13+View
Carya illinoinensisCiPaw.09G008200PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDChr09-View
Citrullus lanatusClCG02G021880histone deacetylase 3 LENGTH=245CG_Chr02-View
Citrullus lanatusClCG10G019420Histone deacetylase 2a, putativeCG_Chr10+View
Cucumis meloMELO3C009430.2histone deacetylase HDT1chr04+View
Corchorus olitoriusCOL.COLO4_29822histone deacetylase HDT1-like proteinAWUE01020406.1+View
Carica papayaCpa.g.sc5.85supercontig_5+View
Chenopodium quinoaAUR62033584HDT1: Histone deacetylase HDT1C_Quinoa_Scaffold_1776+View
Chenopodium quinoaAUR62041415HDT1: Histone deacetylase HDT1C_Quinoa_Scaffold_3863-View
Chenopodium quinoaAUR62038296HDT1: Histone deacetylase HDT1C_Quinoa_Scaffold_2169-View
Capsella rubellaCarub.0006s0266PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDscaffold_6+View
Cucumis sativus L.CsaV3_6G014670histone deacetylase HDT1-likechr6-View
Cucumis sativus L.CsaV3_3G036760histone deacetylase HDT1chr3-View
Daucus carotaDCAR_020779hypothetical proteinDCARv2_Chr6-View
Davidia involucrataDinv21263GWHABJS00000021+View
Davidia involucrataDinv29421GWHABJS00000007+View
Davidia involucrataDinv19823GWHABJS00000015-View
Durio zibethinusDuzib170G0280NW_019167871.1+View
Durio zibethinusDuzib093G2204NW_019167937.1+View
Durio zibethinusDuzib168G1452NW_019168159.1+View
Erigeron canadensisECA233G1515Conyza_canadensis_scaffold:1+View
Erigeron canadensisECA248G1510Conyza_canadensis_scaffold:9-View
Erythranthe guttataMigut.L01752scaffold_12-View
Erythranthe guttataMigut.J00993scaffold_10+View
Eutrema salsugineumThhalv10014245m.gPTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDscaffold_2+View
Fragaria x ananassaFAN05G4964PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDFvb6-3+View
Fragaria x ananassaFAN09G2940PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDFvb6-2+View
Fragaria x ananassaFAN05G5765PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDFvb6-3+View
Fragaria x ananassaFAN02G0070PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDFvb6-4+View
Fragaria x ananassaFAN14G1368PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDFvb6-1-View
Fragaria vescaFvH4_6g17790PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDFvb6-View
Gossypium hirsutumGohir.D01G198600PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDD01+View
Gossypium hirsutumGohir.A01G209500PF03066 - Nucleoplasmin (Nucleoplasmin)A01+View
Glycine maxGlyma.11G189500K11276 - nucleophosmin 1 (NPM1)Gm11+View
Glycine maxGlyma.12G181400PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDGm12-View
Glycine maxGlyma.19G191000PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDGm19-View
Glycine maxGlyma.13G319500PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDGm13+View
Glycine maxGlyma.12G0847003.5.1.98 - Histone deacetylase / HDACGm12-View
Glycine maxGlyma.03G190700PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDGm03-View
Gossypium raimondiiGorai.002G242800Chr02+View
Helianthus annuusHanXRQChr11g0351121Putative zinc finger, C2H2HanXRQChr11-View
Lupinus albusLalb_Chr20g0112191PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDLalb_Chr20+View
Lupinus albusLalb_Chr22g0350611PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDLalb_Chr22-View
Lupinus albusLalb_Chr03g0027901K11276 - nucleophosmin 1 (NPM1)Lalb_Chr03-View
Lotus japonicusLj3g0018637PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDchr3-View
Lotus japonicusLj1g0014712PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDchr1+View
Lotus japonicusLj3g0001709K11276 - nucleophosmin 1 (NPM1)chr3+View
Lonicera japonicaLj2C128T7GWHAAZE00000002-View
Lonicera japonicaLj2A995T21GWHAAZE00000002+View
Lactuca sativaLsat_1_v5_gn_1_50361PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDLsat_1_v8_lg_1-View
Malus domesticaMD11G1156500histone deacetylase 2CChr11-View
Malus domesticaMD03G1134300histone deacetylase 3Chr03-View
Malus domesticaMD14G1014900histone deacetylase 2CChr14-View
Malus domesticaMD12G1016900histone deacetylase 2CChr12-View
Manihot esculentaManes.09G060536Chromosome09+View
Manihot esculentaManes.04G009200Chromosome04+View
Medicago truncatulaMedtr2g084815histone deacetylase 2a, putativechr2+View
Nelumbo nuciferaNn2g13988chr2-View
Nicotiana tabacumNitab4.5_0001922g0030Zinc finger, C2H2Nitab4.5_0001922+View
Punica granatumPGR119G1578NC_045132.1+View
Punica granatumPGR102G0030NC_045129.1-View
Prunus persicaPrupe.7G118500Pp07+View
Prunus persicaPrupe.6G118700PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDPp06-View
Papaver somniferumPSO384G0416NC_039368.1+View
Papaver somniferumPSO063G4060NC_039364.1-View
Papaver somniferumPSO339G0838NC_039366.1-View
Populus trichocarpaPotri.009G149400PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDChr09+View
Populus trichocarpaPotri.004G188800PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDChr04+View
Populus trichocarpaPotri.006G116500PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDChr06+View
Phaseolus vulgarisPhvul.001G186300PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDChr01-View
Phaseolus vulgarisPhvul.005G127600PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATEDChr05+View
Phaseolus vulgarisPhvul.011G090000K11276 - nucleophosmin 1 (NPM1)Chr11-View
Quercus lobataQL07p0406567+View
Rosa chinensisRcHm_v2.0_Chr3g0472041RcHm_v2.0_Chr3-View
Rhododendron simsiiRhsim13G0105400chr13+View
Rhododendron simsiiRhsim03G0081700chr03+View
Salvia bowleyanaSalBow3G0353GWHASIU00000006+View
Salix brachistaSabra04G0129300GWHAAZH00000004-View
Salix brachistaSabra06G0090900GWHAAZH00000006+View
Salix brachistaSabra09G0118000GWHAAZH00000009+View
Simmondsia chinensisSc20g0006000GWHAASQ00000020-View
Sechium eduleSed0003899LG04-View
Solanum lycopersicumSolyc09g009030.4Histone deacetylase HDT1 (AHRD V3.3 *** HDT1_SOLCH)SL4.0ch09-View
Solanum lycopersicumSolyc11g066840.3Histone deacetylase HDT1 (AHRD V3.3 *** A0A2G2VQ39_CAPBA)SL4.0ch11-View
Solanum lycopersicumSolyc10g085560.3Histone deacetylase HDT1 (AHRD V3.3 *** A0A2G3BFH9_CAPCH)SL4.0ch10-View
Schrenkiella parvulaSp6g38980PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATEDch6-6-View
Solanum pennelliiSopen10g034970Histone deacetylase 2a (HD2a) (Nucleolar histone deacetylase HD2-p39) - Glycine max (Soybean), Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots. | histone deacetylase 3 (HDA3) | CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type , Nucleoplasmin | BEST Arabidopsis thaliana protein match is: histone deacetylase 2B .Spenn-ch10-View
Solanum pennelliiSopen11g026550Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots. | histone deacetylase 3 (HDA3) | CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type , Nucleoplasmin | BEST Arabidopsis thaliana protein match is: histone deacetylase 2B ., Histone deacetylase 2a (HD2a) (Nucleolar histone deacetylase HD2-p39) - Glycine max (Soybean)Spenn-ch11-View
Solanum tuberosumPGSC0003DMG400026532DeacetylaseST4.03ch11-View
Solanum tuberosumPGSC0003DMG400002684Histone deacetylase HDT1ST4.03ch09+View
Trochodendron aralioidesTAR633G0649group2+View
Trochodendron aralioidesTAR636G1096group1-View
Trochodendron aralioidesTAR369G0885group18-View
Theobroma cacaoThecc.05G080400Histone deacetylase 2CChromosome_5-View
Theobroma cacaoThecc.09G292300Histone deacetylase 2CChromosome_9+View
Tarenaya hasslerianaTHA.LOC104816375histone deacetylase HDT3 isoform X1NW_010965775.1+View
Trifolium pratenseTPR.G32379Tp57577_TGAC_v2_scaf_195-View
Trifolium pratenseTPR.G10243Tp57577_TGAC_v2_LG6+View
Tripterygium wilfordiiTWI75G0541NC_052253.1-View
Tripterygium wilfordiiTWI79G0547NC_052238.1-View
Tripterygium wilfordiiTWI74G1258NC_052234.1-View
Utricularia gibbaunitig_22.g5116unitig_22-View
Vaccinium macrocarponvmacro07367Similar to HDT1: Histone deacetylase HDT1 (Solanum chacoense OX%3D4108)scaffold00230_Vaccinium_macrocarpon_Stevens_v1+View
Vigna mungoVMungo1383G2827CM024070.1-View
Vigna mungoVMungo1127G1742CM024076.1-View
Vigna mungoVMungo1080G0825CM024079.1-View
Vitis viniferaGSVIVG01031404001chr6-View
Vitis viniferaGSVIVG01033775001chr8+View