Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold64G21996 scaffold64 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G4440 LG-11 + View
Acer truncatum Atru.chr7.2500 chr7 - View
Actinidia chinensis Actinidia14102 Lachesis_group14 + View
Actinidia chinensis Actinidia13210 Lachesis_group18 + View
Actinidia chinensis Actinidia22315 Lachesis_group23 - View
Actinidia chinensis Actinidia21910 Lachesis_group15 - View
Arabidopsis lyrata AL7G19850 scaffold_7 - View
Arabidopsis lyrata AL6G36870 scaffold_6 + View
Amaranthus hybridus Ah.16g104810 AmaHy_arrow1_Scaffold_16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZFW2W7 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.11 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TRGC7G PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.1PI2YG PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED arahy.Tifrunner.gnm1.Arahy.16 - View
Arabidopsis thaliana AT5G11060 homeobox protein knotted-1-like 4 A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5)%2C with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined%2C but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis%3B GUS expression pattern started at the elongation zone%2C predominantly in the phloem and pericycle cells%2C extending to endodermis toward the base of the root. KNOTTED1-like homeobox gene 4 (KNAT4)%3B FUNCTIONS IN: transcription activator activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to light stimulus%3B LOCATED IN: cytosol%2C nucleus%2C cytoplasm%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539)%2C KNOX1 (InterPro:IPR005540)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C KNOX2 (InterPro:IPR005541)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.1)%3B Has 5905 Blast hits to 5890 proteins in 326 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2030%3B Fungi - 312%3B Plants - 3367%3B Viruses - 0%3B Other Eukaryotes - 196 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT4G32040 homeobox protein knotted-1-like 5 A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4)%2C with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis%2C primarily in the epidermis of the distal end of primary root elongation zone. KNOTTED1-like homeobox gene 5 (KNAT5)%3B CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539)%2C KNOX1 (InterPro:IPR005540)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C KNOX2 (InterPro:IPR005541)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.2)%3B Has 6199 Blast hits to 6196 proteins in 330 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2065%3B Fungi - 300%3B Plants - 3657%3B Viruses - 0%3B Other Eukaryotes - 177 (source: NCBI BLink). Chr4 + View
Brassica carinata BcaNung04978 Contig1803 - View
Brassica carinata BcaNung03131 Contig1063 + View
Brassica carinata BcaNung03209 Contig1081 + View
Brassica napus A01p06250 A01 - View
Brassica napus A06p35980 A06 + View
Brassica napus C07p42620 C07 - View
Brassica napus C01p06890 C01 - View
Brassica oleracea BolC7t44791H C7 - View
Brassica rapa BraA06t26522Z A06 + View
Beta vulgaris EL10Ac2g04154 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr2_EL10_PGA_scaffold6 + View
Camellia sinensis var. sinensis CSS0042236 PREDICTED: homeobox protein knotted-1-like 3 isoform X3 [Nelumbo nucifera] Chr14 + View
Camellia sinensis var. sinensis CSS0044960 PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Vitis vinifera] Chr12 - View
Cannabis sativa CANSAT25G1761 NC_044370.1 + View
Cicer arietinum L. Ca_13042_v3 Ca_LG4_v3 - View
Corylus avellana Haze_21458 Similar to Homeobox protein knotted-1-like 3 (Malus domestica OX%3D3750) 3 + View
Coffea canephora Cc08_g00210 Homeobox protein knotted-1-like 3 chr8 + View
Citrus clementina Ciclev10008269m.g scaffold_1 + View
Carya illinoinensis CiPaw.08G008400 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr08 + View
Carya illinoinensis CiPaw.07G227100 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr07 - View
Citrullus lanatus ClCG08G013550 Homeobox protein knotted-1, putative CG_Chr08 - View
Citrullus lanatus ClCG05G016600 Homeobox protein knotted-1, putative CG_Chr05 + View
Cucumis melo MELO3C011281.2 Homeobox protein knotted-1, putative chr03 + View
Carica papaya Cpa.g.sc187.27 supercontig_187 - View
Carica papaya Cpa.g.sc46.88 supercontig_46 - View
Chenopodium quinoa AUR62012445 KNAT3: Homeobox protein knotted-1-like 3 C_Quinoa_Scaffold_1995 - View
Chenopodium quinoa AUR62031570 KNAT3: Homeobox protein knotted-1-like 3 C_Quinoa_Scaffold_1206 - View
Capsella rubella Carub.0006s2304 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED scaffold_6 + View
Cucumis sativus L. CsaV3_2G032310 Homeobox protein knotted-1-like chr2 - View
Daucus carota DCAR_017764 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv15888 GWHABJS00000017 - View
Durio zibethinus Duzib168G1729 NW_019168159.1 + View
Durio zibethinus Duzib150G1394 NW_019167882.1 - View
Durio zibethinus Duzib150G0628 NW_019167882.1 + View
Durio zibethinus Duzib168G1603 NW_019168159.1 + View
Erigeron canadensis ECA246G4192 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.C02727 Chr03 + View
Erythranthe guttata Migut.E01822 scaffold_5 - View
Eutrema salsugineum Thhalv10004250m.g scaffold_6 + View
Fragaria x ananassa FAN15G2358 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2-4 + View
Fragaria x ananassa FAN24G3512 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2-2 - View
Fragaria x ananassa FAN20G1474 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2-3 + View
Fragaria x ananassa FAN27G1197 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2-1 + View
Fragaria vesca FvH4_2g28300 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2 + View
Gossypium hirsutum Gohir.D06G102100 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED D06 - View
Gossypium hirsutum Gohir.A06G099900 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED A06 - View
Gossypium hirsutum Gohir.D13G188500 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED D13 + View
Gossypium hirsutum Gohir.D05G059100 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED D05 - View
Glycine max Glyma.17G104800 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Gm17 + View
Glycine max Glyma.17G215500 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Gm17 - View
Glycine max Glyma.06G065200 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Gm06 + View
Glycine max Glyma.14G112400 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Gm14 + View
Glycine max Glyma.04G064100 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Gm04 + View
Gossypium raimondii Gorai.010G056100 Chr10 + View
Gossypium raimondii Gorai.010G117100 Chr10 - View
Gossypium raimondii Gorai.013G213900 Chr13 + View
Gossypium raimondii Gorai.009G060200 Chr09 - View
Helianthus annuus HanXRQChr13g0403111 Probable homeobox protein knotted-1-like 3 HanXRQChr13 - View
Lupinus albus Lalb_Chr08g0244271 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Lalb_Chr08 - View
Lupinus albus Lalb_Chr07g0179521 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Lalb_Chr07 - View
Lupinus albus Lalb_Chr11g0063611 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Lalb_Chr11 + View
Lotus japonicus Lj1g0023269 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED chr1 - View
Lonicera japonica Lj8C732G3 GWHAAZE00000008 - View
Lactuca sativa Lsat_1_v5_gn_6_20120 Lsat_1_v8_lg_6 + View
Malus domestica MD08G1153600 KNOTTED1-like homeobox gene 3 Chr08 - View
Malus domestica MD15G1130800 KNOTTED1-like homeobox gene 3 Chr15 - View
Malus domestica MD15G1159800 KNOTTED1-like homeobox gene 3 Chr15 + View
Manihot esculenta Manes.14G138700 Chromosome14 - View
Manihot esculenta Manes.16G126100 Chromosome16 - View
Medicago truncatula Medtr3g106400 class II knotted-like homeobox protein chr3 + View
Medicago truncatula Medtr1g012960 class II knotted-like homeobox protein chr1 - View
Olea europaea Oeu056765.1 chr13 - View
Olea europaea Oeu057291.1 chr18 + View
Petunia axillaris Peaxi162Scf00116g00083 Homeobox protein knotted-1-like 3 Peaxi162Scf00116 + View
Punica granatum PGR044G1766 NC_045134.1 - View
Prunus persica Prupe.1G486200 Pp01 - View
Prunus persica Prupe.7G254700 Pp07 + View
Populus trichocarpa Potri.018G022700 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr18 + View
Populus trichocarpa Potri.006G259400 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr06 - View
Phaseolus vulgaris Phvul.009G090500 Chr09 + View
Quercus lobata QL02p091335 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr6g0297211 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim02G0205900 chr02 - View
Salvia bowleyana SalBow4G0593 GWHASIU00000008 + View
Simmondsia chinensis Sc23g0006540 GWHAASQ00000023 + View
Sechium edule Sed0019443 LG13 + View
Sechium edule Sed0018968 LG03 - View
Sechium edule Sed0024191 LG05 - View
Sapria himalayana SHI18504 scaffold28_7511268 + View
Trochodendron aralioides TAR625G0821 group4 + View
Trochodendron aralioides TAR383G0568 group10 + View
Theobroma cacao Thecc.09G019600 Chromosome_9 + View
Tarenaya hassleriana THA.LOC104803641 homeobox protein knotted-1-like 5 NW_010971389.1 + View
Trifolium pratense TPR.G3150 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI34G1381 NC_052235.1 - View
Tripterygium wilfordii TWI63G0156 NC_052240.1 + View
Vaccinium macrocarpon vmacro11213 Similar to KNAT3: Homeobox protein knotted-1-like 3 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G3335 CM024074.1 - View
Vigna mungo VMungo1309G1499 CM024072.1 - View
Vitis vinifera GSVIVG01035921001 chr4 + View