Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold95G28908 scaffold95 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G15000 LG-10 + View
Aethionema arabicum Aa31LG1G26810 LG-1 + View
Acer truncatum Atru.chr5.288 chr5 + View
Actinidia chinensis Actinidia31397 Lachesis_group0 - View
Actinidia chinensis Actinidia25027 Lachesis_group22 - View
Actinidia chinensis Actinidia13562 Lachesis_group3 + View
Actinidia chinensis Actinidia12249 Lachesis_group25 - View
Arabidopsis lyrata AL5G43060 scaffold_5 + View
Arabidopsis lyrata AL4G44380 scaffold_4 + View
Avicennia marina MSTRG.17175 ScioBoG_19743_HRSCAF_19834 + View
Avicennia marina MSTRG.20739 ScioBoG_26180_HRSCAF_26306 + View
Amaranthus hybridus Ah.05g174410 Transketolase-2, chloroplastic (TK) (EC 2.2.1.1) AmaHy_arrow1_Scaffold_5 - View
Aquilegia oxysepala Aqoxy7G00662 CHR07 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.A52I0E 2.2.1.1 - Transketolase / Glycoaldehyde transferase arahy.Tifrunner.gnm1.Arahy.12 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.N7BB1S K00615 - transketolase (E2.2.1.1, tktA, tktB) arahy.Tifrunner.gnm1.Arahy.02 + View
Arabidopsis thaliana AT2G45280 RAS associated with diabetes protein 51C Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation%2C interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions. RAS associated with diabetes protein 51C (RAD51C)%3B CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (InterPro:IPR020588)%2C DNA recombination and repair protein%2C RecA-like (InterPro:IPR016467)%2C DNA recombination and repair protein Rad51%2C C-terminal (InterPro:IPR013632)%3B BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT3G22880.1)%3B Has 5546 Blast hits to 5533 proteins in 2007 species: Archae - 678%3B Bacteria - 2546%3B Metazoa - 757%3B Fungi - 474%3B Plants - 412%3B Viruses - 0%3B Other Eukaryotes - 679 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT3G60750 Transketolase Transketolase%3B FUNCTIONS IN: catalytic activity%2C transketolase activity%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%3B LOCATED IN: chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: Transketolase%2C bacterial-like (InterPro:IPR005478)%2C Transketolase%2C N-terminal (InterPro:IPR005474)%2C Transketolase%2C C-terminal (InterPro:IPR005476)%2C Transketolase-like%2C C-terminal (InterPro:IPR015941)%2C Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (InterPro:IPR009014)%2C Transketolase-like%2C pyrimidine-binding domain (InterPro:IPR005475)%2C Transketolase binding site (InterPro:IPR020826)%3B BEST Arabidopsis thaliana protein match is: Transketolase (TAIR:AT2G45290.1)%3B Has 19296 Blast hits to 19203 proteins in 2759 species: Archae - 202%3B Bacteria - 11440%3B Metazoa - 321%3B Fungi - 314%3B Plants - 204%3B Viruses - 0%3B Other Eukaryotes - 6815 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC02g12228 ChrC02 - View
Brassica carinata BcaC07g40594 ChrC07 + View
Brassica napus C04p06210 C04 + View
Brassica napus A04p01460 A04 - View
Brassica napus A05p05300 A05 + View
Brassica napus A09p52910 A09 + View
Brassica napus C08p35680 C08 + View
Brassica oleracea BolC8t51159H C8 + View
Brassica oleracea BolC4t22247H C4 + View
Brassica oleracea BolC4t24747H C4 - View
Brassica rapa BraA09t40723Z A09 + View
Brassica rapa BraA05t19499Z A05 + View
Brassica rapa BraA04t15864Z A04 - View
Beta vulgaris EL10Ac1g00872 K10870 - RAD51-like protein 2 (RAD51L2, RAD51C) Chr1_EL10_PGA_scaffold3 + View
Camellia sinensis var. sinensis CSS0012627 transketolase [Camellia sinensis] Chr6 - View
Camellia sinensis var. sinensis CSS0048837 PREDICTED: DNA repair protein RAD51 homolog 3 [Vitis vinifera] Chr3 + View
Cicer arietinum L. Ca_19947_v3 Ca_LG6_v3 + View
Coffea canephora Cc02_g24060 Transketolase, chloroplastic chr2 - View
Citrus clementina Ciclev10018991m.g scaffold_3 - View
Ceratophyllum demersum CDE04G2074 2 - View
Ceratophyllum demersum CDE09G0499 7 + View
Ceratophyllum demersum CDE12G0107 10 + View
Carpinus fangiana Cfa001750 Cfa01 - View
Cardamine hirsuta CARHR140490 DNA repair and recombination protein radA, putative Chr4 + View
Cardamine hirsuta CARHR248160 Transketolase, putative Chr8 - View
Cardamine hirsuta CARHR171140 Transketolase Chr5 + View
Carya illinoinensis CiPaw.02G169100 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase Chr02 - View
Carya illinoinensis CiPaw.01G263500 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase Chr01 - View
Citrullus lanatus ClCG06G000460 Transketolase family protein CG_Chr06 - View
Citrullus lanatus ClCG05G002350 Transketolase, putative CG_Chr05 - View
Cucumis melo MELO3C006200.2 transketolase, chloroplastic chr06 - View
Cucumis melo MELO3C022495.2 Non-specific serine/threonine protein kinase chr11 + View
Corchorus olitorius COL.COLO4_12528 hypothetical protein AWUE01014928.1 + View
Carica papaya Cpa.g.sc18.103 supercontig_18 + View
Chenopodium quinoa AUR62013651 TKL-2: Transketolase-2, chloroplastic C_Quinoa_Scaffold_1412 - View
Chenopodium quinoa AUR62004193 RAD51C: DNA repair protein RAD51 homolog 3 C_Quinoa_Scaffold_4250 + View
Capsella rubella Carub.0005s2748 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase scaffold_5 + View
Capsella rubella Carub.0004s2788 K10870 - RAD51-like protein 2 (RAD51L2, RAD51C) scaffold_4 + View
Cucumis sativus L. CsaV3_3G009790 Transketolase chr3 - View
Cucumis sativus L. CsaV3_6G006270 Transketolase chr6 - View
Daucus carota DCAR_008552 hypothetical protein DCARv2_Chr2 + View
Daucus carota DCAR_031520 hypothetical protein DCARv2_Chr7 + View
Davidia involucrata Dinv22969 GWHABJS00000009 - View
Davidia involucrata Dinv43692 GWHABJS00000016 + View
Davidia involucrata Dinv32367 GWHABJS00000020 + View
Durio zibethinus Duzib138G0139 NW_019167893.1 + View
Durio zibethinus Duzib133G1401 NW_019167938.1 + View
Erigeron canadensis ECA236G2516 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.D02466 Chr04 + View
Erythranthe guttata Migut.B01619 scaffold_2 + View
Eutrema salsugineum Thhalv10001529m.g K10870 - RAD51-like protein 2 (RAD51L2, RAD51C) scaffold_22 + View
Eutrema salsugineum Thhalv10005892m.g 2.2.1.1 - Transketolase / Glycoaldehyde transferase scaffold_19 - View
Fragaria x ananassa FAN03G3383 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase Fvb7-3 - View
Fragaria x ananassa FAN01G1392 2.2.1.1 - Transketolase / Glycoaldehyde transferase Fvb7-4 - View
Fragaria x ananassa FAN06G1243 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase Fvb7-2 + View
Fragaria x ananassa FAN10G0703 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase Fvb7-1 + View
Fragaria x ananassa FAN06G5055 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase Fvb7-2 + View
Fragaria x ananassa FAN10G0988 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase Fvb7-1 + View
Fragaria vesca FvH4_7g11500 K10870 - RAD51-like protein 2 (RAD51L2, RAD51C) Fvb7 + View
Gossypium hirsutum Gohir.D07G152500 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase D07 - View
Gossypium hirsutum Gohir.D08G156500 K10870 - RAD51-like protein 2 (RAD51L2, RAD51C) D08 - View
Gossypium hirsutum Gohir.A08G135700 K10870 - RAD51-like protein 2 (RAD51L2, RAD51C) A08 - View
Gossypium hirsutum Gohir.D12G104400 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase D12 + View
Gossypium hirsutum Gohir.D11G084800 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase D11 + View
Gossypium hirsutum Gohir.A12G101400 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase A12 + View
Gossypium hirsutum Gohir.A07G146400 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase A07 - View
Gossypium hirsutum Gohir.A11G080100 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase A11 + View
Glycine max Glyma.03G027500 2.2.1.1 - Transketolase / Glycoaldehyde transferase Gm03 - View
Gossypium raimondii Gorai.007G090400 Chr07 + View
Gossypium raimondii Gorai.001G174600 Chr01 - View
Gossypium raimondii Gorai.008G113400 Chr08 + View
Gossypium raimondii Gorai.004G162800 Chr04 - View
Helianthus annuus HanXRQChr16g0532481 Probable RAS associated with diabetes protein 51C HanXRQChr16 + View
Hydrangea macrophylla Hma1.2p1_0301F.1_g118600 Hma1.2p1_0301F.1 + View
Lupinus albus Lalb_Chr19g0127331 2.2.1.1 - Transketolase / Glycoaldehyde transferase Lalb_Chr19 - View
Lupinus albus Lalb_Chr07g0189921 2.2.1.1 - Transketolase / Glycoaldehyde transferase Lalb_Chr07 - View
Lotus japonicus Lj3g0018034 K10870 - RAD51-like protein 2 (RAD51L2, RAD51C) chr3 + View
Lonicera japonica Lj7A531T52 GWHAAZE00000007 - View
Lactuca sativa Lsat_1_v5_gn_7_9600 2.2.1.1 - Transketolase / Glycoaldehyde transferase Lsat_1_v8_lg_7 - View
Lactuca sativa Lsat_1_v5_gn_3_132321 2.2.1.1 - Transketolase / Glycoaldehyde transferase Lsat_1_v8_lg_3 + View
Malus domestica MD02G1207000 RAS associated with diabetes protein 51C Chr02 + View
Malus domestica MD07G1119400 RAS associated with diabetes protein 51C Chr07 + View
Manihot esculenta Manes.05G047000 Chromosome05 - View
Medicago truncatula Medtr4g024630 plastid transketolase chr4 - View
Nelumbo nucifera Nn1g01135 chr1 + View
Olea europaea Oeu055502.1 chr1 - View
Olea europaea Oeu005799.2 chr3 - View
Petunia axillaris Peaxi162Scf00238g00810 Transketolase Peaxi162Scf00238 + View
Punica granatum PGR042G1557 NC_045130.1 - View
Punica granatum PGR004G0700 NC_045131.1 - View
Prunus persica Prupe.2G143400 K10870 - RAD51-like protein 2 (RAD51L2, RAD51C) Pp02 + View
Populus trichocarpa Potri.014G068100 K10870 - RAD51-like protein 2 (RAD51L2, RAD51C) Chr14 + View
Populus trichocarpa Potri.002G146300 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase Chr02 + View
Phaseolus vulgaris Phvul.010G082100 K10870 - RAD51-like protein 2 (RAD51L2, RAD51C) Chr10 + View
Quercus lobata QL08p052781 8 - View
Rosa chinensis RcHm_v2.0_Chr1g0349891 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim03G0169800 chr03 + View
Rhododendron simsii Rhsim07G0028800 chr07 - View
Salvia bowleyana SalBow5G0090 GWHASIU00000003 - View
Salvia bowleyana SalBow5G4377 GWHASIU00000003 - View
Salix brachista Sabra14G0047800 GWHAAZH00000014 + View
Salix brachista Sabra02G0113900 GWHAAZH00000002 + View
Simmondsia chinensis Sc23g0003680 GWHAASQ00000023 - View
Sechium edule Sed0028009 LG02 + View
Sechium edule Sed0003578 LG12 - View
Sechium edule Sed0000766 LG04 + View
Solanum lycopersicum Solyc05g050950.2 DNA repair protein RAD51-like protein 3 (AHRD V3.3 *-* A0A2G3CFM9_CAPCH) SL4.0ch05 + View
Solanum lycopersicum Solyc10g018300.3 Transketolase (AHRD V3.3 *** A0A200R9X0_9MAGN) SL4.0ch10 - View
Schrenkiella parvula Sp5g02500 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase ch5-1 - View
Schrenkiella parvula Sp4g27300 K10870 - RAD51-like protein 2 (RAD51L2, RAD51C) ch4-6 + View
Solanum pennellii Sopen10g007500 Transketolase, chloroplast precursor (EC 2.2.1.1) (TK) - Solanum tuberosum (Potato), Transketolase | FUNCTIONS IN: catalytic activity, transketolase activity | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 16 growth stages | CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal , Transketolase, C-terminal , Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II , Transketolase-like, pyrimidine-binding domain , Transketolase binding site , Transketolase, bacterial-like , Transketolase-like, C-terminal | BEST Arabidopsis thaliana protein match is: Transketolase ., Transketolase, N-terminal Spenn-ch10 - View
Solanum pennellii Sopen05g029430 Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions. | RAS associated with diabetes protein 51C (RAD51C) | CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain , DNA recombination and repair protein, RecA-like , DNA recombination and repair protein Rad51, C-terminal | BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein ., Meiotic recombination protein DMC1 homolog - Glycine max (Soybean) Spenn-ch05 + View
Solanum tuberosum PGSC0003DMG400007020 DNA repair and recombination protein radA ST4.03ch05 + View
Selenicereus undatus Hund17029 Scaffold_33675 - View
Trochodendron aralioides TAR374G0718 group12 + View
Trochodendron aralioides TAR375G1132 group15 + View
Trochodendron aralioides TAR629G2158 group0 + View
Theobroma cacao Thecc.01G378700 Transketolase Chromosome_1 - View
Tarenaya hassleriana THA.LOC104817238 DNA repair protein RAD51 homolog 3 NW_010965946.1 + View
Tarenaya hassleriana THA.LOC104802453 transketolase-1%2C chloroplastic-like NW_010970490.1 - View
Tripterygium wilfordii TWI59G0361 NC_052248.1 + View
Tripterygium wilfordii TWI14G0061 NC_052249.1 + View
Utricularia gibba unitig_0.g1300 unitig_0 - View
Vaccinium macrocarpon vmacro13414 Similar to TKL-2: Transketolase-2, chloroplastic (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro06777 Similar to TKL-2: Transketolase-2, chloroplastic (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0331G1707 CM024078.1 + View
Vitis vinifera GSVIVG01018555001 chr16 + View
Vitis vinifera GSVIVG01027667001 chr15 - View