Functional clusters
Information
- Type Gene Ontology
- Description plastid ribosome
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 3 | CH_amhyb_1 | 22 | 60 | 2.96862e-46 |
| Arabidopsis thaliana | ChrC | 3 | CH_ath_1 | 30 | 70 | 5.65695e-78 |
| Brassica napus | C06 | 3 | CH_bna_19 | 8 | 20 | 1.91012e-17 |
| Brassica oleracea | Boleracea_scaffold_29 | 3 | CH_bol_15 | 13 | 72 | 2.10586e-19 |
| Brassica rapa | Brapa_scaffold_138 | 3 | CH_bra_10 | 11 | 45 | 1.7509e-17 |
| Cardamine hirsuta | ChrC | 3 | CH_chi_1 | 18 | 73 | 2.39908e-38 |
| Cucumis melo | chr00 | 3 | CH_cme_148 | 3 | 3 | 0.0000271037 |
| Cucumis melo | chr00 | 3 | CH_cme_149 | 3 | 3 | 0.0000271037 |
| Carica papaya | supercontig_0 | 3 | CH_cpa_92 | 3 | 3 | 0.00000298254 |
| Daucus carota | DCARv2_PT | 3 | CH_dca_1 | 21 | 76 | 2.06366e-46 |
| Erythranthe guttata | scaffold_4 | 3 | CH_egut_19 | 11 | 45 | 2.21203e-21 |
| Gossypium hirsutum | A12 | 3 | CH_ghi_409 | 4 | 10 | 0.0000526895 |
| Gossypium hirsutum | D12 | 3 | CH_ghi_493 | 3 | 3 | 0.000189138 |
| Gossypium hirsutum | D01 | 3 | CH_ghi_56 | 9 | 19 | 8.39854e-17 |
| Helianthus annuus | HanXRQChr12 | 3 | CH_han_161 | 6 | 8 | 0.000000000682992 |
| Helianthus annuus | HanXRQChr11 | 3 | CH_han_180 | 6 | 9 | 0.00000000204415 |
| Helianthus annuus | HanXRQChr04 | 3 | CH_han_236 | 5 | 6 | 0.0000000534679 |
| Helianthus annuus | HanXRQChr02 | 3 | CH_han_475 | 4 | 6 | 0.0000482721 |
| Helianthus annuus | HanXRQCP | 3 | CH_han_6 | 18 | 51 | 6.54418e-29 |
| Hydrangea macrophylla | Hma1.2p1_0298F.1 | 3 | CH_hma_53 | 4 | 5 | 0.0000000628888 |
| Lupinus albus | Lalb_Chr07 | 3 | CH_lal_17 | 11 | 43 | 7.80901e-19 |
| Lupinus albus | Lalb_Chr03 | 3 | CH_lal_255 | 3 | 3 | 0.0000714621 |
| Lupinus albus | Lalb_Chr25 | 3 | CH_lal_256 | 3 | 3 | 0.0000714621 |
| Lotus japonicus | Contig00318 | 3 | CH_lja_4 | 15 | 50 | 1.50134e-28 |
| Lotus japonicus | Contig00319 | 3 | CH_lja_45 | 7 | 25 | 0.0000000000512271 |
| Nelumbo nucifera | scaffold020 | 3 | CH_nnu_248 | 4 | 25 | 0.00027628 |
| Nicotiana tabacum | Nitab4.5_0000173 | 3 | CH_nta_21 | 4 | 6 | 0.000000029409 |
| Petunia axillaris | Peaxi162Scf00299 | 3 | CH_pax_140 | 3 | 3 | 0.00000504909 |
| Punica granatum | NC_035240.1 | 3 | CH_pgr_4 | 18 | 66 | 8.63606e-37 |
| Phaseolus vulgaris | Chr02 | 3 | CH_pvu_148 | 4 | 8 | 0.00000105099 |
| Salvia bowleyana | GWHASIU00000001 | 3 | CH_sbo_9 | 15 | 50 | 9.50611e-35 |
| Simmondsia chinensis | GWHAASQ00000025 | 3 | CH_sci_18 | 6 | 13 | 0.0000000000231486 |
| Sechium edule | Contig00297 | 3 | CH_sed_2 | 17 | 73 | 1.12148e-28 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_437 | 5 | 9 | 0.00000000126033 |
| Selaginella moellendorffii | scaffold_175 | 3 | CH_smo_3 | 14 | 66 | 3.86992e-27 |
| Selenicereus undatus | Scaffold_33676 | 3 | CH_sun_42 | 4 | 4 | 0.000000265105 |
| Trochodendron aralioides | group15 | 3 | CH_tar_76 | 4 | 4 | 0.0000000031456 |
| Utricularia gibba | unitig_91 | 3 | CH_ugi_2 | 12 | 44 | 3.57806e-24 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 4 | CH_amhyb_1 | 22 | 60 | 2.96862e-46 |
| Arabidopsis thaliana | ChrC | 4 | CH_ath_1 | 30 | 70 | 5.65695e-78 |
| Brassica napus | C06 | 4 | CH_bna_19 | 8 | 20 | 1.91012e-17 |
| Brassica oleracea | Boleracea_scaffold_29 | 4 | CH_bol_15 | 13 | 72 | 2.10586e-19 |
| Brassica rapa | Brapa_scaffold_138 | 4 | CH_bra_10 | 11 | 45 | 1.7509e-17 |
| Cardamine hirsuta | ChrC | 4 | CH_chi_1 | 18 | 73 | 2.39908e-38 |
| Cucumis melo | chr00 | 4 | CH_cme_148 | 3 | 3 | 0.0000271037 |
| Cucumis melo | chr00 | 4 | CH_cme_149 | 3 | 3 | 0.0000271037 |
| Carica papaya | supercontig_0 | 4 | CH_cpa_92 | 3 | 3 | 0.00000298254 |
| Daucus carota | DCARv2_PT | 4 | CH_dca_1 | 21 | 76 | 2.06366e-46 |
| Erythranthe guttata | scaffold_4 | 4 | CH_egut_19 | 11 | 45 | 2.21203e-21 |
| Gossypium hirsutum | A12 | 4 | CH_ghi_409 | 4 | 10 | 0.0000526895 |
| Gossypium hirsutum | D12 | 4 | CH_ghi_493 | 3 | 3 | 0.000189138 |
| Gossypium hirsutum | D01 | 4 | CH_ghi_56 | 9 | 19 | 8.39854e-17 |
| Helianthus annuus | HanXRQChr12 | 4 | CH_han_161 | 6 | 8 | 0.000000000682992 |
| Helianthus annuus | HanXRQChr11 | 4 | CH_han_180 | 6 | 9 | 0.00000000204415 |
| Helianthus annuus | HanXRQChr04 | 4 | CH_han_236 | 5 | 6 | 0.0000000534679 |
| Helianthus annuus | HanXRQChr02 | 4 | CH_han_475 | 4 | 6 | 0.0000482721 |
| Helianthus annuus | HanXRQCP | 4 | CH_han_6 | 18 | 51 | 6.54418e-29 |
| Hydrangea macrophylla | Hma1.2p1_0298F.1 | 4 | CH_hma_53 | 4 | 5 | 0.0000000628888 |
| Lupinus albus | Lalb_Chr07 | 4 | CH_lal_17 | 11 | 43 | 7.80901e-19 |
| Lupinus albus | Lalb_Chr03 | 4 | CH_lal_255 | 3 | 3 | 0.0000714621 |
| Lupinus albus | Lalb_Chr25 | 4 | CH_lal_256 | 3 | 3 | 0.0000714621 |
| Lotus japonicus | Contig00318 | 4 | CH_lja_4 | 15 | 50 | 1.50134e-28 |
| Lotus japonicus | Contig00319 | 4 | CH_lja_45 | 7 | 25 | 0.0000000000512271 |
| Nelumbo nucifera | scaffold020 | 4 | CH_nnu_248 | 4 | 25 | 0.00027628 |
| Nicotiana tabacum | Nitab4.5_0000173 | 4 | CH_nta_21 | 4 | 6 | 0.000000029409 |
| Petunia axillaris | Peaxi162Scf00299 | 4 | CH_pax_140 | 3 | 3 | 0.00000504909 |
| Punica granatum | NC_035240.1 | 4 | CH_pgr_4 | 18 | 66 | 8.63606e-37 |
| Phaseolus vulgaris | Chr02 | 4 | CH_pvu_148 | 4 | 8 | 0.00000105099 |
| Salvia bowleyana | GWHASIU00000001 | 4 | CH_sbo_9 | 15 | 50 | 9.50611e-35 |
| Simmondsia chinensis | GWHAASQ00000025 | 4 | CH_sci_18 | 6 | 13 | 0.0000000000231486 |
| Sechium edule | Contig00297 | 4 | CH_sed_2 | 17 | 73 | 1.12148e-28 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_437 | 5 | 9 | 0.00000000126033 |
| Selaginella moellendorffii | scaffold_175 | 4 | CH_smo_3 | 14 | 66 | 3.86992e-27 |
| Selenicereus undatus | Scaffold_33676 | 4 | CH_sun_42 | 4 | 4 | 0.000000265105 |
| Trochodendron aralioides | group15 | 4 | CH_tar_76 | 4 | 4 | 0.0000000031456 |
| Utricularia gibba | unitig_91 | 4 | CH_ugi_2 | 12 | 44 | 3.57806e-24 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000311 | plastid large ribosomal subunit | 4 |
| GO:0000312 | plastid small ribosomal subunit | 10 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |