Functional clusters

Information

  • Type Gene Ontology
  • Description DNA-templated transcription, initiation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 3 CH_aag_123 4 8 0.000123787
Carya illinoinensis Chr01 3 CH_cil_438 3 3 0.000263714
Davidia involucrata GWHABJS00000007 3 CH_din_337 3 3 0.000320118
Lupinus albus Lalb_Chr08 3 CH_lal_174 4 5 0.00000378659
Solanum lycopersicum SL4.0ch06 3 CH_sly_197 4 4 0.000000524454
Theobroma cacao Chromosome_1 3 CH_tca_406 3 4 0.00099155
Tarenaya hassleriana NW_010961290.1 3 CH_tha_86 4 7 0.0000307631
Anthoceros agrestis Sc2ySwM_228 4 CH_aag_123 4 8 0.000123787
Carya illinoinensis Chr01 4 CH_cil_438 3 3 0.000263714
Davidia involucrata GWHABJS00000007 4 CH_din_337 3 3 0.000320118
Lupinus albus Lalb_Chr08 4 CH_lal_174 4 5 0.00000378659
Solanum lycopersicum SL4.0ch06 4 CH_sly_197 4 4 0.000000524454
Theobroma cacao Chromosome_1 4 CH_tca_406 3 4 0.00099155
Tarenaya hassleriana NW_010961290.1 4 CH_tha_86 4 7 0.0000307631

Available child term results

Ontology identifier Description Number of clusters
GO:0001188 RNA polymerase I preinitiation complex assembly 8
GO:0006367 transcription initiation from RNA polymerase II promoter 6
GO:0006384 transcription initiation from RNA polymerase III promoter 2
GO:0051123 RNA polymerase II preinitiation complex assembly 12
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0070897 transcription preinitiation complex assembly 4
GO:2000143 negative regulation of DNA-templated transcription, initiation 48

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001