Functional clusters
Information
- Type Gene Ontology
- Description positive regulation of defense response to virus by host
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group17 | 3 | CH_ach_50 | 3 | 4 | 0.000000354074 |
| Brassica napus | A03 | 3 | CH_bna_216 | 3 | 3 | 0.000000421715 |
| Brassica napus | C03 | 3 | CH_bna_217 | 3 | 3 | 0.000000421715 |
| Cannabis sativa | NC_044375.1 | 3 | CH_cansat_41 | 8 | 76 | 0.000000000000197648 |
| Eucalyptus grandis | Chr05 | 3 | CH_egr_288 | 7 | 26 | 0.0000000000552161 |
| Eucalyptus grandis | Chr05 | 3 | CH_egr_62 | 13 | 50 | 2.16194e-23 |
| Lotus japonicus | chr2 | 3 | CH_lja_65 | 4 | 5 | 0.00000000180971 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 3 | CH_lsa_119 | 4 | 6 | 0.000000000769859 |
| Magnolia biondii | Chr15 | 3 | CH_mbi_117 | 7 | 39 | 0.00000000071901 |
| Malus domestica | Chr09 | 3 | CH_mdo_107 | 5 | 14 | 0.000000000265524 |
| Malus domestica | Chr17 | 3 | CH_mdo_130 | 4 | 5 | 0.00000000250254 |
| Medicago truncatula | chr6 | 3 | CH_mtr_127 | 5 | 11 | 0.00000000000781457 |
| Punica granatum | NC_045128.1 | 3 | CH_pgr_203 | 3 | 5 | 0.00000709158 |
| Prunus persica | Pp01 | 3 | CH_ppe_74 | 8 | 56 | 0.000000000000246576 |
| Pisum sativum | chr1LG6 | 3 | CH_psa_298 | 3 | 19 | 0.000221048 |
| Quercus lobata | CM012294 | 3 | CH_qlo_167 | 6 | 10 | 0.0000000000000321472 |
| Rhododendron simsii | chr11 | 3 | CH_rsi_55 | 7 | 15 | 2.89554e-17 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_25 | 16 | 48 | 1.76949e-35 |
| Theobroma cacao | Chromosome_7 | 3 | CH_tca_29 | 6 | 9 | 0.00000000000000183955 |
| Tarenaya hassleriana | NW_010965946.1 | 3 | CH_tha_97 | 4 | 40 | 0.0000661204 |
| Actinidia chinensis | Lachesis_group17 | 4 | CH_ach_50 | 3 | 4 | 0.000000354074 |
| Brassica napus | A03 | 4 | CH_bna_216 | 3 | 3 | 0.000000421715 |
| Brassica napus | C03 | 4 | CH_bna_217 | 3 | 3 | 0.000000421715 |
| Cannabis sativa | NC_044375.1 | 4 | CH_cansat_41 | 8 | 76 | 0.000000000000197648 |
| Eucalyptus grandis | Chr05 | 4 | CH_egr_288 | 7 | 26 | 0.0000000000552161 |
| Eucalyptus grandis | Chr05 | 4 | CH_egr_62 | 13 | 50 | 2.16194e-23 |
| Lotus japonicus | chr2 | 4 | CH_lja_65 | 4 | 5 | 0.00000000180971 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 4 | CH_lsa_119 | 4 | 6 | 0.000000000769859 |
| Magnolia biondii | Chr15 | 4 | CH_mbi_117 | 7 | 39 | 0.00000000071901 |
| Malus domestica | Chr09 | 4 | CH_mdo_107 | 5 | 14 | 0.000000000265524 |
| Malus domestica | Chr17 | 4 | CH_mdo_130 | 4 | 5 | 0.00000000250254 |
| Medicago truncatula | chr6 | 4 | CH_mtr_127 | 5 | 11 | 0.00000000000781457 |
| Punica granatum | NC_045128.1 | 4 | CH_pgr_203 | 3 | 5 | 0.00000709158 |
| Prunus persica | Pp01 | 4 | CH_ppe_74 | 8 | 56 | 0.000000000000246576 |
| Pisum sativum | chr1LG6 | 4 | CH_psa_298 | 3 | 19 | 0.000221048 |
| Quercus lobata | CM012294 | 4 | CH_qlo_167 | 6 | 10 | 0.0000000000000321472 |
| Rhododendron simsii | chr11 | 4 | CH_rsi_55 | 7 | 15 | 2.89554e-17 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_25 | 16 | 48 | 1.76949e-35 |
| Theobroma cacao | Chromosome_7 | 4 | CH_tca_29 | 6 | 9 | 0.00000000000000183955 |
| Tarenaya hassleriana | NW_010965946.1 | 4 | CH_tha_97 | 4 | 40 | 0.0000661204 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |