Functional clusters

Information

  • Type Gene Ontology
  • Description RNA splicing, via transesterification reactions

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC03 3 CH_bca_93 6 10 0.0000000000560269
Brassica napus C02 3 CH_bna_241 4 5 0.00000102243
Brassica carinata ChrC03 4 CH_bca_93 6 10 0.0000000000560269
Brassica napus C02 4 CH_bna_241 4 5 0.00000102243

Available child term results

Ontology identifier Description Number of clusters
GO:0000244 spliceosomal tri-snRNP complex assembly 20
GO:0000245 spliceosomal complex assembly 24
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000354 cis assembly of pre-catalytic spliceosome 2
GO:0000372 Group I intron splicing 10
GO:0000373 Group II intron splicing 14
GO:0000380 alternative mRNA splicing, via spliceosome 2
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 4
GO:0000387 spliceosomal snRNP assembly 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000398 mRNA splicing, via spliceosome 20
GO:0006376 mRNA splice site selection 8
GO:0045292 mRNA cis splicing, via spliceosome 22
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001