Functional clusters

Information

  • Type MapMan
  • Description RNA processing.mRNA silencing.miRNA/siRNA methyltransferase (HEN1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group17 1 CH_ach_160 2 2 0.000162964
Arabidopsis lyrata scaffold_7 1 CH_aly_247 2 2 0.0000660044
Arabidopsis thaliana Chr4 1 CH_ath_399 2 7 0.00060159
Brassica carinata ChrC09 1 CH_bca_37 4 4 0.000000000000439574
Brassica napus C01 1 CH_bna_469 2 2 0.0000556545
Brassica oleracea C1 1 CH_bol_57 3 3 0.0000000016026
Brassica rapa A01 1 CH_bra_60 3 3 0.00000000276471
Camellia sinensis var. sinensis Chr8 1 CH_camsi_247 3 6 0.0000000630768
Capsicum annuum PGAv.1.6.scaffold79 1 CH_can_440 2 5 0.000826003
Cicer arietinum L. Ca_LG6_v3 1 CH_car_178 2 2 0.0000778301
Corylus avellana 9 1 CH_cav_61 4 12 0.00000000334483
Ceratophyllum demersum 1 1 CH_cde_122 2 2 0.0000789796
Cardamine hirsuta Chr7 1 CH_chi_263 2 2 0.0000691204
Capsella rubella scaffold_7 1 CH_cru_285 2 2 0.0000731154
Davidia involucrata GWHABJS00000020 1 CH_din_454 2 3 0.000450094
Eutrema salsugineum scaffold_1 1 CH_esa_195 2 2 0.0000761499
Fragaria x ananassa Fvb5-3 1 CH_fan_639 2 2 0.000832663
Helianthus annuus HanXRQChr04 1 CH_han_450 2 2 0.0000386429
Simmondsia chinensis GWHAASQ00000017 1 CH_sci_179 2 2 0.0000851426
Schrenkiella parvula ch7-4 1 CH_spa_184 2 2 0.000078734
Zea mays 7 1 CH_zma_263 2 2 0.000511313
Actinidia chinensis Lachesis_group17 2 CH_ach_160 2 2 0.000162964
Arabidopsis lyrata scaffold_7 2 CH_aly_247 2 2 0.0000660044
Arabidopsis thaliana Chr4 2 CH_ath_399 2 7 0.00060159
Brassica carinata ChrC09 2 CH_bca_37 4 4 0.000000000000439574
Brassica oleracea C1 2 CH_bol_57 3 3 0.0000000016026
Brassica rapa A01 2 CH_bra_60 3 3 0.00000000276471
Camellia sinensis var. sinensis Chr8 2 CH_camsi_247 3 6 0.0000000630768
Capsicum annuum PGAv.1.6.scaffold79 2 CH_can_440 2 5 0.000826003
Cicer arietinum L. Ca_LG6_v3 2 CH_car_178 2 2 0.0000778301
Corylus avellana 9 2 CH_cav_61 4 12 0.00000000334483
Ceratophyllum demersum 1 2 CH_cde_122 2 2 0.0000789796
Cardamine hirsuta Chr7 2 CH_chi_263 2 2 0.0000691204
Capsella rubella scaffold_7 2 CH_cru_285 2 2 0.0000731154
Davidia involucrata GWHABJS00000020 2 CH_din_454 2 3 0.000450094
Eutrema salsugineum scaffold_1 2 CH_esa_195 2 2 0.0000761499
Fragaria x ananassa Fvb5-3 2 CH_fan_639 2 2 0.000832663
Helianthus annuus HanXRQChr04 2 CH_han_450 2 2 0.0000386429
Simmondsia chinensis GWHAASQ00000017 2 CH_sci_179 2 2 0.0000851426
Schrenkiella parvula ch7-4 2 CH_spa_184 2 2 0.000078734
Zea mays 7 2 CH_zma_263 2 2 0.000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001