Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.photorespiration.hydroxypyruvate reductase activities.non-peroxisomal hydroxypyruvate reductase (HPR)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr9 1 CH_acertr_317 2 2 0.000070497
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 1 CH_amhyb_269 2 2 0.000841751
Aquilegia oxysepala CHR07 1 CH_aox_89 3 4 0.000000771754
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 1 CH_arhy_260 3 3 0.00000038452
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_308 3 4 0.00000153788
Brassica carinata ChrC07 1 CH_bca_268 3 3 0.000000196034
Brassica carinata ChrB08 1 CH_bca_63 4 4 0.000000000020953
Brassica napus A09 1 CH_bna_212 3 3 0.000000187912
Brassica napus C08 1 CH_bna_213 3 3 0.000000187912
Brassica oleracea C8 1 CH_bol_123 3 4 0.000000358955
Brassica rapa A09 1 CH_bra_319 2 2 0.000429314
Capsicum annuum PGAv.1.6.scaffold438 1 CH_can_187 3 4 0.00000229267
Capsicum annuum PGAv.1.6.scaffold1561 1 CH_can_69 4 4 0.000000000118407
Coffea canephora chr4 1 CH_ccan_291 2 7 0.000268306
Citrus clementina scaffold_3 1 CH_ccl_169 3 3 0.000000565268
Citrus clementina scaffold_7 1 CH_ccl_205 3 4 0.00000226063
Carpinus fangiana Cfa01 1 CH_cfa_169 3 7 0.0000105334
Cucumis melo chr01 1 CH_cme_46 4 4 0.0000000000623531
Cucumis melo chr06 1 CH_cme_85 4 13 0.0000000445263
Corchorus olitorius AWUE01020729.1 1 CH_col_36 3 3 0.00000448004
Cucumis sativus L. chr7 1 CH_csa_124 3 3 0.000000365847
Cucumis sativus L. chr3 1 CH_csa_87 4 10 0.0000000128167
Davidia involucrata GWHABJS00000006 1 CH_din_503 2 2 0.000750188
Davidia involucrata GWHABJS00000020 1 CH_din_504 2 2 0.000750188
Durio zibethinus NW_019167893.1 1 CH_dzi_82 3 3 0.000000064448
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_484 2 2 0.000673083
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_485 2 2 0.000673083
Eucalyptus grandis Chr05 1 CH_egr_68 8 11 6.05355e-23
Erythranthe guttata scaffold_9 1 CH_egut_465 2 2 0.000728147
Eutrema salsugineum scaffold_5 1 CH_esa_255 2 2 0.00022845
Fragaria x ananassa Fvb7-1 1 CH_fan_231 3 4 0.00000273188
Fragaria x ananassa Fvb7-2 1 CH_fan_295 3 6 0.0000136557
Fragaria vesca Fvb6 1 CH_fve_148 3 3 0.000000182202
Fragaria vesca Fvb7 1 CH_fve_53 4 4 0.0000000000214683
Glycine max Gm07 1 CH_gma_59 4 4 0.00000000000574176
Gossypium raimondii Chr03 1 CH_gra_69 4 4 0.00000000003236
Helianthus annuus HanXRQChr04 1 CH_han_295 3 4 0.00000107505
Lotus japonicus chr2 1 CH_lja_129 3 3 0.000000153406
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_208 3 3 0.000000475577
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_245 3 4 0.000001902
Magnolia biondii Chr01 1 CH_mbi_675 2 3 0.00087414
Malus domestica Chr07 1 CH_mdo_647 2 2 0.000379212
Malus domestica Chr09 1 CH_mdo_648 2 2 0.000379212
Manihot esculenta Chromosome05 1 CH_mes_195 3 3 0.000000469831
Manihot esculenta Chromosome04 1 CH_mes_215 3 4 0.00000187901
Medicago truncatula chr4 1 CH_mtr_207 4 9 0.00000000330185
Medicago truncatula chr8 1 CH_mtr_304 3 3 0.000000212703
Nelumbo nucifera chr2 1 CH_nnu_387 2 3 0.000392399
Olea europaea chr18 1 CH_oeu_380 2 2 0.000533789
Oryza sativa ssp. japonica chr04 1 CH_osa_37 4 5 0.0000000000110479
Punica granatum NC_045127.1 1 CH_pgr_162 3 6 0.00000590943
Prunus persica Pp02 1 CH_ppe_46 7 20 3.78384e-17
Pisum sativum chr4LG4 1 CH_psa_104 3 3 0.000000081633
Papaver somniferum NC_039361.1 1 CH_pso_358 3 8 0.00000937089
Papaver somniferum NC_039365.1 1 CH_pso_63 5 7 0.0000000000000320993
Phaseolus vulgaris Chr10 1 CH_pvu_160 3 4 0.000000323876
Quercus lobata 8 1 CH_qlo_145 5 5 0.0000000000000422109
Quercus lobata 5 1 CH_qlo_494 3 3 0.000000879652
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_246 4 12 0.0000000465188
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_41 7 11 8.26039e-20
Rhododendron simsii chr02 1 CH_rsi_99 4 4 0.000000000101586
Sequoiadendron giganteum chr8 1 CH_sgi_266 4 4 0.00000000000520279
Solanum lycopersicum SL4.0ch03 1 CH_sly_552 2 2 0.000880411
Solanum lycopersicum SL4.0ch12 1 CH_sly_553 2 2 0.000880411
Schrenkiella parvula ch1-1 1 CH_spa_225 2 2 0.000236202
Solanum tuberosum ST4.03ch12 1 CH_stu_519 2 2 0.000307472
Solanum tuberosum ST4.03ch08 1 CH_stu_520 2 2 0.000307472
Selenicereus undatus Scaffold_33678 1 CH_sun_204 2 2 0.000217992
Trochodendron aralioides group1 1 CH_tar_556 2 2 0.000900549
Theobroma cacao Chromosome_3 1 CH_tca_217 3 4 0.00000270296
Theobroma cacao Chromosome_1 1 CH_tca_83 4 4 0.000000000148511
Vigna mungo CM024078.1 1 CH_vmu_105 3 4 0.000000250487
Vitis vinifera chr9 1 CH_vvi_386 2 2 0.000456378
Acer truncatum chr9 2 CH_acertr_317 2 2 0.000070497
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 2 CH_amhyb_269 2 2 0.000841751
Aquilegia oxysepala CHR07 2 CH_aox_89 3 4 0.000000771754
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 2 CH_arhy_260 3 3 0.00000038452
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_308 3 4 0.00000153788
Brassica carinata ChrC07 2 CH_bca_268 3 3 0.000000196034
Brassica carinata ChrB08 2 CH_bca_63 4 4 0.000000000020953
Brassica oleracea C8 2 CH_bol_123 3 4 0.000000358955
Brassica rapa A09 2 CH_bra_319 2 2 0.000429314
Capsicum annuum PGAv.1.6.scaffold438 2 CH_can_187 3 4 0.00000229267
Capsicum annuum PGAv.1.6.scaffold1561 2 CH_can_69 4 4 0.000000000118407
Coffea canephora chr4 2 CH_ccan_291 2 7 0.000268306
Citrus clementina scaffold_3 2 CH_ccl_169 3 3 0.000000565268
Citrus clementina scaffold_7 2 CH_ccl_205 3 4 0.00000226063
Carpinus fangiana Cfa01 2 CH_cfa_169 3 7 0.0000105334
Cucumis melo chr01 2 CH_cme_46 4 4 0.0000000000623531
Cucumis melo chr06 2 CH_cme_85 4 13 0.0000000445263
Corchorus olitorius AWUE01020729.1 2 CH_col_36 3 3 0.00000448004
Cucumis sativus L. chr7 2 CH_csa_124 3 3 0.000000365847
Cucumis sativus L. chr3 2 CH_csa_87 4 10 0.0000000128167
Davidia involucrata GWHABJS00000006 2 CH_din_503 2 2 0.000750188
Davidia involucrata GWHABJS00000020 2 CH_din_504 2 2 0.000750188
Durio zibethinus NW_019167893.1 2 CH_dzi_82 3 3 0.000000064448
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_484 2 2 0.000673083
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_485 2 2 0.000673083
Eucalyptus grandis Chr05 2 CH_egr_68 8 11 6.05355e-23
Erythranthe guttata scaffold_9 2 CH_egut_465 2 2 0.000728147
Eutrema salsugineum scaffold_5 2 CH_esa_255 2 2 0.00022845
Fragaria x ananassa Fvb7-1 2 CH_fan_231 3 4 0.00000273188
Fragaria x ananassa Fvb7-2 2 CH_fan_295 3 6 0.0000136557
Fragaria vesca Fvb6 2 CH_fve_148 3 3 0.000000182202
Fragaria vesca Fvb7 2 CH_fve_53 4 4 0.0000000000214683
Glycine max Gm07 2 CH_gma_59 4 4 0.00000000000574176
Gossypium raimondii Chr03 2 CH_gra_69 4 4 0.00000000003236
Helianthus annuus HanXRQChr04 2 CH_han_295 3 4 0.00000107505
Lotus japonicus chr2 2 CH_lja_129 3 3 0.000000153406
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_208 3 3 0.000000475577
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_245 3 4 0.000001902
Magnolia biondii Chr01 2 CH_mbi_675 2 3 0.00087414
Malus domestica Chr07 2 CH_mdo_647 2 2 0.000379212
Malus domestica Chr09 2 CH_mdo_648 2 2 0.000379212
Manihot esculenta Chromosome05 2 CH_mes_195 3 3 0.000000469831
Manihot esculenta Chromosome04 2 CH_mes_215 3 4 0.00000187901
Nelumbo nucifera chr2 2 CH_nnu_387 2 3 0.000392399
Olea europaea chr18 2 CH_oeu_380 2 2 0.000533789
Oryza sativa ssp. japonica chr04 2 CH_osa_37 4 5 0.0000000000110479
Punica granatum NC_045127.1 2 CH_pgr_162 3 6 0.00000590943
Prunus persica Pp02 2 CH_ppe_46 7 20 3.78384e-17
Pisum sativum chr4LG4 2 CH_psa_104 3 3 0.000000081633
Papaver somniferum NC_039361.1 2 CH_pso_358 3 8 0.00000937089
Papaver somniferum NC_039365.1 2 CH_pso_63 5 7 0.0000000000000320993
Phaseolus vulgaris Chr10 2 CH_pvu_160 3 4 0.000000323876
Quercus lobata 8 2 CH_qlo_145 5 5 0.0000000000000422109
Quercus lobata 5 2 CH_qlo_494 3 3 0.000000879652
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_246 4 12 0.0000000465188
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_41 7 11 8.26039e-20
Rhododendron simsii chr02 2 CH_rsi_99 4 4 0.000000000101586
Sequoiadendron giganteum chr8 2 CH_sgi_266 4 4 0.00000000000520279
Solanum lycopersicum SL4.0ch03 2 CH_sly_552 2 2 0.000880411
Solanum lycopersicum SL4.0ch12 2 CH_sly_553 2 2 0.000880411
Schrenkiella parvula ch1-1 2 CH_spa_225 2 2 0.000236202
Solanum tuberosum ST4.03ch12 2 CH_stu_519 2 2 0.000307472
Solanum tuberosum ST4.03ch08 2 CH_stu_520 2 2 0.000307472
Selenicereus undatus Scaffold_33678 2 CH_sun_204 2 2 0.000217992
Trochodendron aralioides group1 2 CH_tar_556 2 2 0.000900549
Theobroma cacao Chromosome_3 2 CH_tca_217 3 4 0.00000270296
Theobroma cacao Chromosome_1 2 CH_tca_83 4 4 0.000000000148511
Vigna mungo CM024078.1 2 CH_vmu_105 3 4 0.000000250487
Vitis vinifera chr9 2 CH_vvi_386 2 2 0.000456378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001